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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456011 (38 seq.)
>W1711223923
LXTQ01000020
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
125605
125530
-
Phe
GAA
[ENA]
¡û
>W1711386438
MEFI01000082
Betaproteobacteria
Thiobacillus sp. SCN 63-1177 [MEFI]
5591
5666
+
Phe
GAA
[ENA]
¡û
>W1711386453
MEFK01000082
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
697
772
+
Phe
GAA
[ENA]
¡û
>W1711387346
MEGN01000014
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
5411
5486
+
Phe
GAA
[ENA]
¡û
>W1711387366
MEGO01000025
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
1891
1816
-
Phe
GAA
[ENA]
¡û
>W1711504037
MKUE01000068
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
7249
7324
+
Phe
GAA
[ENA]
¡û
>W1711504110
MKUG01000026
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
8407
8332
-
Phe
GAA
[ENA]
¡û
>W1711506530
MKWM01000018
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
205681
205606
-
Phe
GAA
[ENA]
¡û
>C171103241
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
1507047
1507122
+
Phe
GAA
-
¡û
>W131160256
AQWL01000002
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
127669
127594
-
Phe
GAA
[ENA]
¡û
>W131174764
ARIS01000068
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
87451
87526
+
Phe
GAA
[ENA]
¡û
>W131230525
AUHR01000011
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
64552
64477
-
Phe
GAA
[ENA]
¡û
>C025421
CP000116
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [CP000116]
90881
90806
-
Phe
GAA
[Ensembl]
¡û
>WENV180295278
OBIZ01052755
[OBIZ] soil metagenome; soil
673
598
-
Phe
GAA
[ENA]
¢þ
>WENV180311131
OBJT01130278
[OBJT] soil metagenome; soil
305
230
-
Phe
GAA
[ENA]
¢þ
>WENV180350462
OBLQ010001206
[OBLQ] soil metagenome; soil
5255
5330
+
Phe
GAA
[ENA]
¢þ
>WENV180371213
OBOI01000764
[OBOI] sediment metagenome; sediment
6326
6251
-
Phe
GAA
[ENA]
¢þ
>WENV181187823
OEOE01000057
[OEOE] activated sludge metagenome; Activated Sludge
2316
2391
+
Phe
GAA
[ENA]
¢þ
>WENV181189043
OEOF01000026
[OEOF] activated sludge metagenome; Activated Sludge
9106
9031
-
Phe
GAA
[ENA]
¢þ
>WENV181231628
OFEK01043583
[OFEK] activated sludge metagenome; Anaerobic digester
808
733
-
Phe
GAA
[ENA]
¢þ
>WENV170007651
AMWB02148886
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
19507
19432
-
Phe
GAA
[ENA]
¢þ
>WENV170669297
LAHR01102379
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
298
223
-
Phe
GAA
[ENA]
¢þ
>C181058455
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2904779
2904704
-
Phe
GAA
-
¡û
>W141557752
JHVK01000001
Betaproteobacteria
Microvirgula aerodenitrificans DSM 15089 [JHVK]
2167
2092
-
Phe
GAA
[ENA]
¡û
>W09101577
AAFH01000002
Betaproteobacteria
Thiobacillus denitrificans ATCC 25259 [AAFH]
441855
441780
-
Phe
GAA
[ENA]
¡û
>W1910547728
FZOA01000001
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
35767
35692
-
Phe
GAA
[ENA]
¡û
>C09107052
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2703310
2703235
-
Phe
GAA
[Ensembl]
¡û
>W1810696493
QLTJ01000002
Betaproteobacteria
Microvirgula sp. AG722 [QLTJ]
459751
459826
+
Phe
GAA
[ENA]
¡û
>C121016357
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
3372646
3372721
+
Phe
GAA
[Ensembl]
¡û
>W1610085410
CTRI01000029
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
97737
97662
-
Phe
GAA
[ENA]
¡û
>W1610085450
CTRJ01000040
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
98685
98610
-
Phe
GAA
[ENA]
¡û
>W1610085491
CTRK01000058
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
28353
28428
+
Phe
GAA
[ENA]
¡û
>W1610085532
CTRL01000060
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
28353
28428
+
Phe
GAA
[ENA]
¡û
>W1611008294
LXTQ01000020
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
125605
125530
-
Phe
GAA
[ENA]
¡û
>W1710089999
CTRI01000029
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
97737
97662
-
Phe
GAA
[ENA]
¡û
>W1710090039
CTRJ01000040
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
98685
98610
-
Phe
GAA
[ENA]
¡û
>W1710090080
CTRK01000058
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
28353
28428
+
Phe
GAA
[ENA]
¡û
>W1710090121
CTRL01000060
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
28353
28428
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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