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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456060 (69 seq.)
>W131001752
AGYK01000017
Bacillota
Clostridium butyricum 60E.3 [AGYK]
4794
4719
-
Lys
CTT
[ENA]
¡û
>W131001771
AGYK01000020
Bacillota
Clostridium butyricum 60E.3 [AGYK]
17075
17150
+
Lys
CTT
[ENA]
¡û
>W131110822
APKZ01000078
Bacillota
Clostridium butyricum DKU-01 [APKZ]
203
278
+
Lys
CTT
[ENA]
¡û
>W131232824
AUJN01000035
Bacillota
Clostridium butyricum AGR2140 [AUJN]
4685
4610
-
Lys
CTT
[ENA]
¡û
>C171021720
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
610710
610785
+
Lys
CTT
-
¡û
>C171021741
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3804969
3804894
-
Lys
CTT
-
¡û
>C171047551
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
415297
415372
+
Lys
CTT
-
¡û
>C171047610
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
3463089
3463014
-
Lys
CTT
-
¡û
>WENV180121457
OASR01005556
[OASR] human gut metagenome; faeces
261
336
+
Lys
CTT
[ENA]
¢þ
>WENV180129489
OATC01017805
[OATC] human gut metagenome; faeces
152
77
-
Lys
CTT
[ENA]
¢þ
>WENV180153276
OAUR01032531
[OAUR] human gut metagenome; faeces
152
77
-
Lys
CTT
[ENA]
¢þ
>WENV180191258
OAXB01010857
[OAXB] human gut metagenome; faeces
174
99
-
Lys
CTT
[ENA]
¢þ
>WENV180278407
OBHX01003928
[OBHX] metagenome; feces
169
244
+
Lys
CTT
[ENA]
¢þ
>WENV180279674
OBHX01065661
[OBHX] metagenome; feces
271
346
+
Lys
CTT
[ENA]
¢þ
>WENV180333626
OBLF01001380
[OBLF] metagenome; feces
66
141
+
Lys
CTT
[ENA]
¢þ
>WENV180334233
OBLF01007061
[OBLF] metagenome; feces
269
344
+
Lys
CTT
[ENA]
¢þ
>WENV180452952
OBXK01010203
[OBXK] human gut metagenome; faeces
164
89
-
Lys
CTT
[ENA]
¢þ
>WENV180505057
OCAO01001263
[OCAO] human gut metagenome; faeces
358
433
+
Lys
CTT
[ENA]
¢þ
>W08001300
ABDT01000022
Bacillota
Clostridium butyricum 5521 [ABDT]
3274
3349
+
Lys
CTT
[ENA]
¡û
>W08001327
ABDT01000074
Bacillota
Clostridium butyricum 5521 [ABDT]
610
685
+
Lys
CTT
[ENA]
¡û
>WENV181798889
OGRX01001035
[OGRX] human gut metagenome; fecal sample 2 from infant 8
291
366
+
Lys
CTT
[ENA]
¢þ
>WENV181801464
OGSB01000350
[OGSB] human gut metagenome; fecal sample 5 from infant 3
19898
19823
-
Lys
CTT
[ENA]
¢þ
>WENV181813800
OGTD01001678
[OGTD] human gut metagenome; fecal sample 1 from infant 3
63
138
+
Lys
CTT
[ENA]
¢þ
>WENV181815073
OGTI01000554
[OGTI] human gut metagenome; fecal sample 5 from infant 1
129
204
+
Lys
CTT
[ENA]
¢þ
>WENV181818349
OGTS01000271
[OGTS] human gut metagenome; fecal sample 4 from infant 4
16791
16866
+
Lys
CTT
[ENA]
¢þ
>W141206240
AZLX01000048
Bacillota
Clostridium butyricum DORA_1 [AZLX]
4543
4468
-
Lys
CTT
[ENA]
¡û
>W141206247
AZLX01000078
Bacillota
Clostridium butyricum DORA_1 [AZLX]
373
298
-
Lys
CTT
[ENA]
¡û
>WENV182401825
OIER01023578
[OIER] human gut metagenome; human gut
238
163
-
Lys
CTT
[ENA]
¢þ
>W141258978
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
578986
578911
-
Lys
CTT
[ENA]
¡û
>WENV182613865
OJKA01025591
[OJKA] metagenome; faeces
429
354
-
Lys
CTT
[ENA]
¢þ
>WENV182824061
OKBZ01002300
[OKBZ] human gut metagenome; human gut
3
78
+
Lys
CTT
[ENA]
¢þ
>WENV182827001
OKCW01001937
[OKCW] human gut metagenome; human gut
1082
1157
+
Lys
CTT
[ENA]
¢þ
>WENV182835048
OKFJ01001909
[OKFJ] human gut metagenome; human gut
1181
1106
-
Lys
CTT
[ENA]
¢þ
>WENV182839487
OKHE01001012
[OKHE] human gut metagenome; human gut
1849
1774
-
Lys
CTT
[ENA]
¢þ
>WENV182852616
OKLZ01001030
[OKLZ] human gut metagenome; human gut
941
866
-
Lys
CTT
[ENA]
¢þ
>WENV182855812
OKNE01002114
[OKNE] human gut metagenome; human gut
444
519
+
Lys
CTT
[ENA]
¢þ
>WENV182864802
OKQE01002880
[OKQE] human gut metagenome; human gut
1179
1254
+
Lys
CTT
[ENA]
¢þ
>WENV182944545
OKVJ01000216
[OKVJ] human gut metagenome; human gut
11006
11081
+
Lys
CTT
[ENA]
¢þ
>WENV182945003
OKVJ01006945
[OKVJ] human gut metagenome; human gut
2132
2057
-
Lys
CTT
[ENA]
¢þ
>WENV182949923
OKVQ01001845
[OKVQ] human gut metagenome; human gut
279
354
+
Lys
CTT
[ENA]
¢þ
>C191171202
CP039702
Bacillota
Clostridium butyricum [CP039702]
3659882
3659807
-
Lys
CTT
-
¡û
>C191171295
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2221570
2221645
+
Lys
CTT
-
¡û
>C191171336
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
1600936
1600861
-
Lys
CTT
-
¡û
>W09132841
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
471587
471512
-
Lys
CTT
[ENA]
¡û
>W09132889
ACOM01000010
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
6886
6961
+
Lys
CTT
[ENA]
¡û
>W1810052496
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
37715
37790
+
Lys
CTT
[ENA]
¡û
>W1810052509
PDCI01000058
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
434
509
+
Lys
CTT
[ENA]
¡û
>W1810052536
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
23317
23242
-
Lys
CTT
[ENA]
¡û
>W1810250566
PQCS01000214
Bacillota
Clostridium sp. 3-3 [PQCS]
239
314
+
Lys
CTT
[ENA]
¡û
>W1810805987
QRUG01000052
Bacillota
Clostridium butyricum AF25-25 [QRUG]
269
344
+
Lys
CTT
[ENA]
¡û
>W1511501352
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
129548
129623
+
Lys
CTT
[ENA]
¡û
>W1511501402
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3370360
3370285
-
Lys
CTT
[ENA]
¡û
>W1511554782
JZWE01000163
Bacillota
Clostridium sp. IBUN22A [JZWE]
3137
3062
-
Lys
CTT
[ENA]
¡û
>W1511554798
JZWF01000005
Bacillota
Clostridium sp. IBUN125C [JZWF]
4670
4595
-
Lys
CTT
[ENA]
¡û
>W1511554884
JZWG01000073
Bacillota
Clostridium sp. IBUN13A [JZWG]
17248
17323
+
Lys
CTT
[ENA]
¡û
>W1511554890
JZWG01000111
Bacillota
Clostridium sp. IBUN13A [JZWG]
4668
4593
-
Lys
CTT
[ENA]
¡û
>W1511554956
JZWH01000050
Bacillota
Clostridium sp. IBUN62F [JZWH]
326
401
+
Lys
CTT
[ENA]
¡û
>W1511554958
JZWH01000050
Bacillota
Clostridium sp. IBUN62F [JZWH]
882
957
+
Lys
CTT
[ENA]
¡û
>C161054136
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
726057
726132
+
Lys
CTT
-
¡û
>C161054180
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
99996
99921
-
Lys
CTT
-
¡û
>C161055889
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
413792
413867
+
Lys
CTT
-
¡û
>C161055933
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
3615150
3615075
-
Lys
CTT
-
¡û
>C161076442
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
3578299
3578224
-
Lys
CTT
-
¡û
>W1610112556
CZLD01000002
Bacillota
Clostridium neonatale [CZLD]
4185
4110
-
Lys
CTT
[ENA]
¡û
>W1610627682
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19840
19765
-
Lys
CTT
[ENA]
¡û
>W1610627701
LIDW01000078
Bacillota
Clostridium butyricum [LIDW]
4470
4395
-
Lys
CTT
[ENA]
¡û
>W1710115260
CZLD01000002
Bacillota
Clostridium neonatale [CZLD]
4185
4110
-
Lys
CTT
[ENA]
¡û
>W1710758809
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19840
19765
-
Lys
CTT
[ENA]
¡û
>W1710758828
LIDW01000078
Bacillota
Clostridium butyricum [LIDW]
4470
4395
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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