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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456154 (101 seq.)
>W1711120841
LUHG01000041
Bacteroidota
Hydrotalea flava [LUHG]
39059
39134
+
Lys
TTT
[ENA]
¡û
>W1711501991
MKSF01000022
Bacteroidota
Bacteroidetes bacterium 47-18 [MKSF]
10318
10393
+
Lys
TTT
[ENA]
¡û
>W1711503766
MKTX01000007
Bacteroidota
Sphingobacteriales bacterium 39-19 [MKTX]
505222
505297
+
Lys
TTT
[ENA]
¡û
>W1711510287
MLAV01000001
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
8363
8436
+
Lys
TTT
[ENA]
¡û
>W1711510288
MLAV01000001
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
25714
25787
+
Lys
TTT
[ENA]
¡û
>W1711510291
MLAV01000010
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
13301
13376
+
Lys
TTT
[ENA]
¡û
>W1711510303
MLAV01000058
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
2278
2205
-
Lys
TTT
[ENA]
¡û
>W1711510311
MLAV01000082
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
22438
22363
-
Lys
TTT
[ENA]
¡û
>W1711510326
MLAV01000204
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
3173
3100
-
Lys
TTT
[ENA]
¡û
>W1711510332
MLAV01000256
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
1818
1743
-
Lys
TTT
[ENA]
¡û
>W131169863
ARFB01000013
Bacteroidota
Segetibacter koreensis DSM 18137 [ARFB]
208940
209013
+
Lys
TTT
[ENA]
¡û
>W131169993
ARFF01000004
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
608289
608362
+
Lys
TTT
[ENA]
¡û
>WENV180298269
OBJA01244528
[OBJA] soil metagenome; sediment, water from around vicinity
66
139
+
Lys
TTT
[ENA]
¢þ
>WENV181167867
OEIU01092451
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
445
371
-
Lys
TTT
[ENA]
¢þ
>WENV181368966
OFQN01006269
[OFQN] freshwater metagenome; Freshwater Lake
805
732
-
Lys
TTT
[ENA]
¢þ
>WENV181836088
OGVJ01000649
[OGVJ] freshwater metagenome; freshwater
4103
4176
+
Lys
TTT
[ENA]
¢þ
>WENV181838709
OGVN01012060
[OGVN] freshwater metagenome; freshwater
280
353
+
Lys
TTT
[ENA]
¢þ
>WENV181843051
OGVU01000170
[OGVU] freshwater metagenome; freshwater
7832
7905
+
Lys
TTT
[ENA]
¢þ
>WENV181857291
OGWO01000265
[OGWO] freshwater metagenome; freshwater
1137
1064
-
Lys
TTT
[ENA]
¢þ
>WENV183726432
PJQF01197175
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
132
59
-
Lys
TTT
[ENA]
¢þ
>WENV183726984
PJTO01001249
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
3233
3306
+
Lys
TTT
[ENA]
¢þ
>WENV183727061
PJTO01003058
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
2728
2801
+
Lys
TTT
[ENA]
¢þ
>WENV183728686
PJTQ01000286
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
24759
24686
-
Lys
TTT
[ENA]
¢þ
>WENV183728759
PJTQ01000404
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
25394
25467
+
Lys
TTT
[ENA]
¢þ
>WENV183734540
PJTZ01016251
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
782
709
-
Lys
TTT
[ENA]
¢þ
>WENV183734550
PJTZ01017122
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
80
7
-
Lys
TTT
[ENA]
¢þ
>WENV183734859
PJUA01000061
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
125168
125241
+
Lys
TTT
[ENA]
¢þ
>WENV183734927
PJUA01000153
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
24757
24684
-
Lys
TTT
[ENA]
¢þ
>WENV183736147
PJUC01000051
[PJUC] soil metagenome; Soil enriched on filter paper
125168
125241
+
Lys
TTT
[ENA]
¢þ
>WENV183736190
PJUC01000105
[PJUC] soil metagenome; Soil enriched on filter paper
24759
24686
-
Lys
TTT
[ENA]
¢þ
>WENV183740510
PJUF01002937
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6227
6300
+
Lys
TTT
[ENA]
¢þ
>WENV183743208
PJUJ01000155
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
177
104
-
Lys
TTT
[ENA]
¢þ
>WENV183743215
PJUJ01000159
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
5435
5362
-
Lys
TTT
[ENA]
¢þ
>WENV183744626
PJUL01000039
[PJUL] feces metagenome; Chicken feces enriched on filter paper
119861
119934
+
Lys
TTT
[ENA]
¢þ
>WENV183744627
PJUL01000039
[PJUL] feces metagenome; Chicken feces enriched on filter paper
175845
175918
+
Lys
TTT
[ENA]
¢þ
>WENV170609426
FUWD011395081
[FUWD] metagenome; unknown
139
214
+
Lys
TTT
[ENA]
¢þ
>WENV170654909
JRYL01077822
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
233
308
+
Lys
TTT
[ENA]
¢þ
>WENV170984962
MWVW01005591
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1609
1534
-
Lys
TTT
[ENA]
¢þ
>WENV170988702
MWVY01000217
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
5390
5317
-
Lys
TTT
[ENA]
¢þ
>WENV170989382
MWVZ01021014
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
416
343
-
Lys
TTT
[ENA]
¢þ
>WENV170989488
MWVZ01038164
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
108
181
+
Lys
TTT
[ENA]
¢þ
>WENV170989683
MWVZ01079759
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
201
128
-
Lys
TTT
[ENA]
¢þ
>WENV170990256
MWWA01000102
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1457
1384
-
Lys
TTT
[ENA]
¢þ
>WENV170990334
MWWA01001509
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
4181
4254
+
Lys
TTT
[ENA]
¢þ
>WENV170990370
MWWA01003060
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
54
129
+
Lys
TTT
[ENA]
¢þ
>WENV170993568
MWWB01357476
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
81
8
-
Lys
TTT
[ENA]
¢þ
>WENV170993953
MWWC01056856
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
157
232
+
Lys
TTT
[ENA]
¢þ
>WENV170994539
MWWE01004285
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
2404
2477
+
Lys
TTT
[ENA]
¢þ
>WENV170995717
MWWF01042319
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
290
215
-
Lys
TTT
[ENA]
¢þ
>WENV170995997
MWWF01112545
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
333
260
-
Lys
TTT
[ENA]
¢þ
>WENV170996313
MWWF01213396
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
116
189
+
Lys
TTT
[ENA]
¢þ
>WENV170997188
MWWG01044227
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
42
115
+
Lys
TTT
[ENA]
¢þ
>WENV170998118
MWWI01017902
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
240
167
-
Lys
TTT
[ENA]
¢þ
>C181090233
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
4858512
4858437
-
Lys
TTT
-
¡û
>C181090235
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
4396715
4396642
-
Lys
TTT
-
¡û
>C181090236
CP023777
Bacteroidota
Chitinophaga caeni 13 [CP023777]
4190986
4190913
-
Lys
TTT
-
¡û
>W1911775070
QXMH01000002
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
1240096
1240169
+
Lys
TTT
[ENA]
¡û
>W1911775083
QXMH01000005
Bacteroidota
Chitinophaga alhagiae T22 [QXMH]
153445
153518
+
Lys
TTT
[ENA]
¡û
>W1911787360
QXZY01000011
Bacteroidota
Chitinophaga barathri YLT18 [QXZY]
168064
167991
-
Lys
TTT
[ENA]
¡û
>W1810686085
QKZV01000001
Bacteroidota
Hydrotalea sandarakina DSM 23241 [QKZV]
529274
529347
+
Lys
TTT
[ENA]
¡û
>W1810693504
QLLL01000002
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
520630
520703
+
Lys
TTT
[ENA]
¡û
>W1810693505
QLLL01000002
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
847596
847523
-
Lys
TTT
[ENA]
¡û
>W1810693507
QLLL01000002
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
222480
222407
-
Lys
TTT
[ENA]
¡û
>W1810693508
QLLL01000002
Bacteroidota
Chitinophaga skermanii DSM 23857 [QLLL]
143643
143568
-
Lys
TTT
[ENA]
¡û
>W1810694468
QLMA01000006
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
65138
65211
+
Lys
TTT
[ENA]
¡û
>W1810694469
QLMA01000007
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
94312
94385
+
Lys
TTT
[ENA]
¡û
>W1810694470
QLMA01000007
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
474724
474797
+
Lys
TTT
[ENA]
¡û
>W1810694471
QLMA01000007
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
466894
466821
-
Lys
TTT
[ENA]
¡û
>W1810694472
QLMA01000008
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
270962
270889
-
Lys
TTT
[ENA]
¡û
>W1810694473
QLMA01000008
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
213385
213312
-
Lys
TTT
[ENA]
¡û
>W1810694480
QLMA01000012
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
93
20
-
Lys
TTT
[ENA]
¡û
>W1810694482
QLMA01000013
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
93
20
-
Lys
TTT
[ENA]
¡û
>C151016394
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
1308935
1308860
-
Lys
TTT
[Ensembl]
¡û
>W1511387781
JSVC01000029
Bacteroidota
Flavihumibacter solisilvae 3·î3Æü [JSVC]
39226
39299
+
Lys
TTT
[ENA]
¡û
>C161090539
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3062697
3062770
+
Lys
TTT
[Ensembl]
¡û
>W121017745
AGSA01000026
Bacteroidota
Niabella soli DSM 19437 [AGSA]
48539
48614
+
Lys
TTT
[ENA]
¡û
>W1610503557
FLNP01000037
Bacteroidota
Hydrotalea flava [FLNP]
3627
3702
+
Lys
TTT
[ENA]
¡û
>W1610503582
FLNQ01000058
Bacteroidota
Hydrotalea flava [FLNQ]
8502
8577
+
Lys
TTT
[ENA]
¡û
>W1610503588
FLNR01000011
Bacteroidota
Hydrotalea flava [FLNR]
6428
6353
-
Lys
TTT
[ENA]
¡û
>W1610503625
FLNT01000021
Bacteroidota
Hydrotalea flava [FLNT]
21257
21182
-
Lys
TTT
[ENA]
¡û
>W1610932038
LUHG01000041
Bacteroidota
Hydrotalea flava [LUHG]
39059
39134
+
Lys
TTT
[ENA]
¡û
>WENV080167
AATO01010711
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
593
516
-
Lys
TTT
[ENA]
>W1710512670
FMZO01000008
Bacteroidota
Niabella drilacis [FMZO]
29767
29840
+
Lys
TTT
[ENA]
¡û
>W1710533190
FNQY01000009
Bacteroidota
Arachidicoccus rhizosphaerae [FNQY]
83818
83745
-
Lys
TTT
[ENA]
¡û
>W1710533885
FNRL01000034
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
6365
6290
-
Lys
TTT
[ENA]
¡û
>W1710533886
FNRL01000038
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
495
420
-
Lys
TTT
[ENA]
¡û
>W1710533889
FNRL01000042
Bacteroidota
Chitinophaga terrae (ex Kim and Jung 2007) Kim and Jung 2007 [FNRL]
4812
4737
-
Lys
TTT
[ENA]
¡û
>W1710591016
FRBL01000002
Bacteroidota
Chitinophaga jiangningensis [FRBL]
102783
102708
-
Lys
TTT
[ENA]
¡û
>W1710591017
FRBL01000003
Bacteroidota
Chitinophaga jiangningensis [FRBL]
126800
126873
+
Lys
TTT
[ENA]
¡û
>W1710591018
FRBL01000003
Bacteroidota
Chitinophaga jiangningensis [FRBL]
116610
116535
-
Lys
TTT
[ENA]
¡û
>W1710591046
FRBL01000008
Bacteroidota
Chitinophaga jiangningensis [FRBL]
467928
467855
-
Lys
TTT
[ENA]
¡û
>W1710591047
FRBL01000008
Bacteroidota
Chitinophaga jiangningensis [FRBL]
188536
188463
-
Lys
TTT
[ENA]
¡û
>W1710591052
FRBL01000011
Bacteroidota
Chitinophaga jiangningensis [FRBL]
143919
143846
-
Lys
TTT
[ENA]
¡û
>W1710591055
FRBL01000012
Bacteroidota
Chitinophaga jiangningensis [FRBL]
158980
159053
+
Lys
TTT
[ENA]
¡û
>W1710601069
FUWZ01000001
Bacteroidota
Chitinophaga eiseniae [FUWZ]
1749726
1749799
+
Lys
TTT
[ENA]
¡û
>W1710601071
FUWZ01000001
Bacteroidota
Chitinophaga eiseniae [FUWZ]
2134264
2134339
+
Lys
TTT
[ENA]
¡û
>W1710601072
FUWZ01000001
Bacteroidota
Chitinophaga eiseniae [FUWZ]
2353371
2353446
+
Lys
TTT
[ENA]
¡û
>W1710601100
FUWZ01000004
Bacteroidota
Chitinophaga eiseniae [FUWZ]
224630
224703
+
Lys
TTT
[ENA]
¡û
>W1710601104
FUWZ01000005
Bacteroidota
Chitinophaga eiseniae [FUWZ]
487354
487281
-
Lys
TTT
[ENA]
¡û
>W1710601108
FUWZ01000006
Bacteroidota
Chitinophaga eiseniae [FUWZ]
498173
498100
-
Lys
TTT
[ENA]
¡û
>W1710601111
FUWZ01000009
Bacteroidota
Chitinophaga eiseniae [FUWZ]
64240
64313
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK