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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456201 (68 seq.)
>W1711066854
LSDG01000027
Bacillota
Peptoniphilus coxii [LSDG]
89560
89486
-
Gly
GCC
[ENA]
¡û
>W1711066858
LSDG01000039
Bacillota
Peptoniphilus coxii [LSDG]
17262
17188
-
Gly
GCC
[ENA]
¡û
>W1711903002
MZGW01000014
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
636
710
+
Gly
GCC
[ENA]
¡û
>W1711903006
MZGW01000017
Bacillota
[Clostridium] thermoalcaliphilum [MZGW]
5400
5326
-
Gly
GCC
[ENA]
¡û
>WENV180042725
LQAG01000218
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
22096
22022
-
Gly
GCC
[ENA]
¢þ
>WENV180042733
LQAG01000287
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
17112
17038
-
Gly
GCC
[ENA]
¢þ
>WENV180042791
LQAG01000759
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
122
196
+
Gly
GCC
[ENA]
¢þ
>WENV180555263
OCJO01105857
[OCJO] human gut metagenome; human gut
48
122
+
Gly
GCC
[ENA]
¢þ
>WENV181247925
OFFL01000318
[OFFL] mouse gut metagenome; faeces
76
2
-
Gly
GCC
[ENA]
¢þ
>WENV181265439
OFGB01000033
[OFGB] mouse gut metagenome; faeces
68038
68112
+
Gly
GCC
[ENA]
¢þ
>WENV181265481
OFGB01000080
[OFGB] mouse gut metagenome; faeces
45778
45852
+
Gly
GCC
[ENA]
¢þ
>WENV181268157
OFGD01000910
[OFGD] mouse gut metagenome; faeces
16758
16832
+
Gly
GCC
[ENA]
¢þ
>WENV181801355
OGSB01000118
[OGSB] human gut metagenome; fecal sample 5 from infant 3
76595
76521
-
Gly
GCC
[ENA]
¢þ
>WENV181804430
OGSF01000681
[OGSF] human gut metagenome; fecal sample 3 from infant 5
5741
5667
-
Gly
GCC
[ENA]
¢þ
>WENV181810536
OGSV01000203
[OGSV] human gut metagenome; fecal sample 4 from infant 3
43096
43022
-
Gly
GCC
[ENA]
¢þ
>WENV182140053
OHKP01033070
[OHKP] human gut metagenome; feces
658
584
-
Gly
GCC
[ENA]
¢þ
>WENV182207765
OHPW01040637
[OHPW] human gut metagenome; feces
663
589
-
Gly
GCC
[ENA]
¢þ
>W141241177
CAHB01000014
Bacillota
Peptoniphilus obesi ph1 [CAHB]
22
96
+
Gly
GCC
[ENA]
¡û
>W141241179
CAHB01000014
Bacillota
Peptoniphilus obesi ph1 [CAHB]
3482
3556
+
Gly
GCC
[ENA]
¡û
>W141246695
CANF01002353
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
117
191
+
Gly
GCC
[ENA]
¡û
>C08005446
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2799994
2799923
-
Gly
GCC
[Ensembl]
¡û
>WENV183151186
OLOP01052583
[OLOP] human gut metagenome; faeces
674
748
+
Gly
GCC
[ENA]
¢þ
>WENV183545631
OOAQ01011326
[OOAQ] human gut metagenome; human gut
1410
1481
+
Gly
GCC
[ENA]
¢þ
>WENV170635095
JDSF01000013
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
149
223
+
Gly
GCC
[ENA]
¢þ
>WENV170635155
JDSF01000140
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
146
220
+
Gly
GCC
[ENA]
¢þ
>WENV170635255
JDSF01000441
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
54
128
+
Gly
GCC
[ENA]
¢þ
>WENV170635414
JDSF01015015
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
446
372
-
Gly
GCC
[ENA]
¢þ
>WENV170650940
JRYE01079695
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
40
114
+
Gly
GCC
[ENA]
¢þ
>WENV170657045
JTFO01072054
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
107
178
+
Gly
GCC
[ENA]
¢þ
>WENV170657381
JTFO01137594
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
304
230
-
Gly
GCC
[ENA]
¢þ
>WENV170675112
LCWZ01007145
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
393
467
+
Gly
GCC
[ENA]
¢þ
>WENV170715372
LNQE01001819
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
18384
18458
+
Gly
GCC
[ENA]
¢þ
>WENV170715402
LNQE01001901
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
35792
35866
+
Gly
GCC
[ENA]
¢þ
>WENV170717412
LSQX01034571
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
126
197
+
Gly
GCC
[ENA]
¢þ
>WENV170717590
LSQX01041658
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8303
8377
+
Gly
GCC
[ENA]
¢þ
>WENV170718296
LSQX01069736
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1541
1467
-
Gly
GCC
[ENA]
¢þ
>WENV170718928
LSQX01095556
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
59378
59304
-
Gly
GCC
[ENA]
¢þ
>WENV170719034
LSQX01099961
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
924
850
-
Gly
GCC
[ENA]
¢þ
>WENV170720046
LSQX01138683
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4895
4821
-
Gly
GCC
[ENA]
¢þ
>WENV170721191
LSQX01182240
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1645
1571
-
Gly
GCC
[ENA]
¢þ
>WENV170721343
LSQX01186838
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
21128
21054
-
Gly
GCC
[ENA]
¢þ
>WENV170721929
LSQX01209855
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4191
4117
-
Gly
GCC
[ENA]
¢þ
>WENV170725716
LSQX01353197
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
140
214
+
Gly
GCC
[ENA]
¢þ
>WENV170980358
MTKZ01135913
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
149
221
+
Gly
GCC
[ENA]
¢þ
>W1911498546
OCTU01000004
Bacillota
Urinicoccus timonensis Marseille-P3926 [OCTU]
91395
91321
-
Gly
GCC
[ENA]
¡û
>C151102871
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
886424
886350
-
Gly
GCC
[Ensembl]
¡û
>C151102876
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
658661
658587
-
Gly
GCC
[Ensembl]
¡û
>W1510148661
CGIH01000026
Bacillota
Syntrophomonas zehnderi OL-4 [CGIH]
97390
97464
+
Gly
GCC
[ENA]
¡û
>W1510148673
CGIH01000031
Bacillota
Syntrophomonas zehnderi OL-4 [CGIH]
64525
64451
-
Gly
GCC
[ENA]
¡û
>W1511351195
JRMZ01000058
Bacillota
Tissierellia bacterium S5-A11 S5-A11 [JRMZ]
94
168
+
Gly
GCC
[ENA]
¡û
>W1610046199
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
108187
108113
-
Gly
GCC
[ENA]
¡û
>W1610046231
BBCE01000019
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
52215
52289
+
Gly
GCC
[ENA]
¡û
>C131003051
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
960485
960559
+
Gly
GCC
[Ensembl]
¡û
>C131003061
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
997691
997765
+
Gly
GCC
[Ensembl]
¡û
>W1610506373
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
1845242
1845168
-
Gly
GCC
[ENA]
¡û
>W1610506401
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
19344
19270
-
Gly
GCC
[ENA]
¡û
>W1610907424
LSDG01000027
Bacillota
Peptoniphilus coxii [LSDG]
89560
89486
-
Gly
GCC
[ENA]
¡û
>W1610907428
LSDG01000039
Bacillota
Peptoniphilus coxii [LSDG]
17262
17188
-
Gly
GCC
[ENA]
¡û
>W1710042995
BBCE01000001
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
108187
108113
-
Gly
GCC
[ENA]
¡û
>W1710043027
BBCE01000019
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
52215
52289
+
Gly
GCC
[ENA]
¡û
>W1710498876
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
1845242
1845168
-
Gly
GCC
[ENA]
¡û
>W1710498904
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
19344
19270
-
Gly
GCC
[ENA]
¡û
>W1710563811
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
300
374
+
Gly
GCC
[ENA]
¡û
>W1710563848
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
200873
200799
-
Gly
GCC
[ENA]
¡û
>W1710582508
FQTY01000032
Bacillota
Tissierella praeacuta DSM 18095 [FQTY]
552
626
+
Gly
GCC
[ENA]
¡û
>W1710586132
FQWY01000016
Bacillota
Thermosyntropha lipolytica DSM 11003 [FQWY]
52689
52615
-
Gly
GCC
[ENA]
¡û
>W1710586575
FQXH01000010
Bacillota
Tepidibacter thalassicus DSM 15285 [FQXH]
501
575
+
Gly
GCC
[ENA]
¡û
>W1710590744
FRBG01000026
Bacillota
[Clostridium] paradoxum JW-YL-7 = DSM 7308 [FRBG]
444
518
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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