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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456297 (13 seq.)
>A171004379
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
1821180
1821108
-
Ala
TGC
-
¡û
>A171004534
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2186892
2186818
-
Ala
TGC
-
¡û
>A171004584
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1855303
1855377
+
Ala
TGC
-
¡û
>A171005399
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1730180
1730252
+
Ala
TGC
-
¡û
>A171005454
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1686286
1686358
+
Ala
TGC
-
¡û
>A171005517
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
1350022
1350094
+
Ala
TGC
-
¡û
>A171005593
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3093184
3093112
-
Ala
TGC
-
¡û
>A171005608
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
52862
52934
+
Ala
TGC
-
¡û
>A171005642
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3034517
3034445
-
Ala
TGC
-
¡û
>At1494
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
4677224
4677152
-
Ala
TGC
[Ensembl]
¡û
>WENV170724606
LSQX01312133
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1386
1314
-
Ala
TGC
[ENA]
¢þ
>W1610000053
AAAR03000069
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
703
775
+
Ala
TGC
[ENA]
¡û
>W1610670235
LKAZ01000003
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
160
234
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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