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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456331 (57 seq.)
>W1711282762
LZOB01000011
Gammaproteobacteria
Serratia marcescens [LZOB]
1623480
1623405
-
Lys
CTT
[ENA]
¡û
>W1711344814
MCNK01000010
Gammaproteobacteria
Serratia marcescens [MCNK]
601341
601266
-
Lys
CTT
[ENA]
¡û
>W1711456200
MJAO01000001
Gammaproteobacteria
Serratia marcescens [MJAO]
99371
99296
-
Lys
CTT
[ENA]
¡û
>W1711475612
MJVB01000021
Gammaproteobacteria
Serratia marcescens [MJVB]
64957
64882
-
Lys
CTT
[ENA]
¡û
>W1711475692
MJVC01000011
Gammaproteobacteria
Serratia marcescens [MJVC]
64957
64882
-
Lys
CTT
[ENA]
¡û
>W1711689584
MSEC01000103
Gammaproteobacteria
Serratia marcescens [MSEC]
14761
14686
-
Lys
CTT
[ENA]
¡û
>W1711714996
MTEH01000001
Gammaproteobacteria
Serratia marcescens [MTEH]
225935
225860
-
Lys
CTT
[ENA]
¡û
>W1712019517
NEYQ01000001
Gammaproteobacteria
Serratia nematodiphila [NEYQ]
589503
589578
+
Lys
CTT
[ENA]
¡û
>C171054182
CP016948
Gammaproteobacteria
Serratia surfactantfaciens YD25 [CP016948]
1204939
1205014
+
Lys
CTT
-
¡û
>W141111578
AVSR01000017
Gammaproteobacteria
Serratia marcescens EGD-HP20 [AVSR]
33628
33553
-
Lys
CTT
[ENA]
¡û
>W141188222
AYMO01000023
Gammaproteobacteria
Serratia marcescens H1q [AYMO]
34042
33967
-
Lys
CTT
[ENA]
¡û
>W141188571
AYMT01000023
Gammaproteobacteria
Serratia marcescens PH1a [AYMT]
34041
33966
-
Lys
CTT
[ENA]
¡û
>WENV182865607
OKQK01002189
[OKQK] human gut metagenome; human gut
951
1026
+
Lys
CTT
[ENA]
¢þ
>C181034586
CP018915
Gammaproteobacteria
Serratia marcescens UMH1 [CP018915]
1161785
1161860
+
Lys
CTT
-
¡û
>C181034673
CP018917
Gammaproteobacteria
Serratia marcescens UMH5 [CP018917]
1262726
1262801
+
Lys
CTT
-
¡û
>C181035277
CP018928
Gammaproteobacteria
Serratia marcescens UMH10 [CP018928]
1160026
1160101
+
Lys
CTT
-
¡û
>C181035364
CP018929
Gammaproteobacteria
Serratia marcescens UMH11 [CP018929]
1160028
1160103
+
Lys
CTT
-
¡û
>C181035451
CP018930
Gammaproteobacteria
Serratia marcescens UMH12 [CP018930]
1152789
1152864
+
Lys
CTT
-
¡û
>C191113075
CP033831
Gammaproteobacteria
Serratia sp. FDAARGOS_506 [CP033831]
3265352
3265427
+
Lys
CTT
-
¡û
>W141808879
JPQY01000026
Gammaproteobacteria
Serratia marcescens [JPQY]
282957
282882
-
Lys
CTT
[ENA]
¡û
>W1910797204
MSTK01000013
Gammaproteobacteria
Serratia sp. OMLW3 [MSTK]
64124
64049
-
Lys
CTT
[ENA]
¡û
>W1910797297
MSTL01000019
Gammaproteobacteria
Serratia sp. OLAL2 [MSTL]
382008
381933
-
Lys
CTT
[ENA]
¡û
>W1910869708
NCQI01000012
Gammaproteobacteria
Serratia marcescens RPH1 [NCQI]
107974
107899
-
Lys
CTT
[ENA]
¡û
>W1911119574
NOMA01000226
Gammaproteobacteria
Serratia marcescens EGD-HP20_1 [NOMA]
9795
9870
+
Lys
CTT
[ENA]
¡û
>W1911640821
PXZP01000002
Gammaproteobacteria
Serratia marcescens EL116 [PXZP]
973373
973448
+
Lys
CTT
[ENA]
¡û
>W1911640870
PXZQ01000001
Gammaproteobacteria
Serratia marcescens EL119 [PXZQ]
1542097
1542172
+
Lys
CTT
[ENA]
¡û
>W1911640992
PXZR01000003
Gammaproteobacteria
Serratia marcescens EL41 [PXZR]
369485
369560
+
Lys
CTT
[ENA]
¡û
>W1911641076
PXZS01000003
Gammaproteobacteria
Serratia marcescens EL60 [PXZS]
348956
348881
-
Lys
CTT
[ENA]
¡û
>C151007390
CP005927
Gammaproteobacteria
Serratia sp. FS14 [CP005927]
4254734
4254659
-
Lys
CTT
[Ensembl]
¡û
>C151100360
HG326223
Gammaproteobacteria
Serratia marcescens subsp. marcescens Db11 [HG326223]
1135940
1136015
+
Lys
CTT
[Ensembl]
¡û
>W1511439913
JUOM01000124
Gammaproteobacteria
Serratia marcescens 907_SMAR [JUOM]
24738
24663
-
Lys
CTT
[ENA]
¡û
>W1511451022
JVCS01000001
Gammaproteobacteria
Serratia marcescens 546_SSON [JVCS]
29469
29394
-
Lys
CTT
[ENA]
¡û
>W1511455032
JVGM01000012
Gammaproteobacteria
Serratia marcescens 454_SMAR [JVGM]
260659
260734
+
Lys
CTT
[ENA]
¡û
>W1511456738
JVHU01000011
Gammaproteobacteria
Serratia marcescens 420_SMAR [JVHU]
260792
260867
+
Lys
CTT
[ENA]
¡û
>W1511457380
JVIF01000028
Gammaproteobacteria
Serratia marcescens 410_SMAR [JVIF]
260635
260710
+
Lys
CTT
[ENA]
¡û
>W1511457937
JVIS01000052
Gammaproteobacteria
Serratia marcescens 398_SMAR [JVIS]
167685
167760
+
Lys
CTT
[ENA]
¡û
>W1511457996
JVIU01000036
Gammaproteobacteria
Serratia marcescens 395_SMAR [JVIU]
29467
29392
-
Lys
CTT
[ENA]
¡û
>W1511458648
JVJP01000067
Gammaproteobacteria
Serratia marcescens 374_SMAR [JVJP]
23723
23648
-
Lys
CTT
[ENA]
¡û
>W1511458801
JVJT01000018
Gammaproteobacteria
Serratia marcescens 370_SMAR [JVJT]
29467
29392
-
Lys
CTT
[ENA]
¡û
>W1511470646
JVWX01000172
Gammaproteobacteria
Shigella boydii 1252_SBOY [JVWX]
24734
24659
-
Lys
CTT
[ENA]
¡û
>W1511470940
JVXI01000109
Gammaproteobacteria
Serratia marcescens 1242_SMAR [JVXI]
29459
29384
-
Lys
CTT
[ENA]
¡û
>W1511470956
JVXJ01000054
Gammaproteobacteria
Serratia marcescens 1241_SMAR [JVXJ]
134657
134732
+
Lys
CTT
[ENA]
¡û
>W1511473233
JWAE01000061
Gammaproteobacteria
Shigella boydii 1177_SBOY [JWAE]
203277
203352
+
Lys
CTT
[ENA]
¡û
>W1511474231
JWBK01000050
Gammaproteobacteria
Shigella boydii 1146_SBOY [JWBK]
24744
24669
-
Lys
CTT
[ENA]
¡û
>W1511474268
JWBL01000147
Gammaproteobacteria
Serratia marcescens 1145_SMAR [JWBL]
24734
24659
-
Lys
CTT
[ENA]
¡û
>W1511622761
LCWI01000024
Gammaproteobacteria
Serratia marcescens 90-166 [LCWI]
37776
37851
+
Lys
CTT
[ENA]
¡û
>W1511682119
LFJS01000012
Gammaproteobacteria
Serratia marcescens subsp. marcescens AH0650_Sm1 [LFJS]
935538
935613
+
Lys
CTT
[ENA]
¡û
>WENV062931
AACY023480868
Marine microbial communities from Global Ocean Sampling (GOS)
416
493
+
Lys
CTT
[ENA]
>W121113766
ALOV01000041
Gammaproteobacteria
Serratia marcescens W2.3 [ALOV]
4174
4099
-
Lys
CTT
[ENA]
¡û
>W1610200655
FCKR01000001
Gammaproteobacteria
Serratia marcescens [FCKR]
836302
836227
-
Lys
CTT
[ENA]
¡û
>W1610202971
FCLY01000001
Gammaproteobacteria
Serratia marcescens [FCLY]
962103
962178
+
Lys
CTT
[ENA]
¡û
>W1610480948
FKZE01000009
Gammaproteobacteria
Klebsiella oxytoca [FKZE]
27553
27628
+
Lys
CTT
[ENA]
¡û
>C131010551
CP003959
Gammaproteobacteria
Serratia marcescens WW4 [CP003959]
1955001
1955076
+
Lys
CTT
[Ensembl]
¡û
>W1610779099
LNZI01000012
Gammaproteobacteria
Serratia sp. YD25 [LNZI] YD25 [LNZI]
987451
987526
+
Lys
CTT
[ENA]
¡û
>W1710202271
FCKR01000001
Gammaproteobacteria
Serratia marcescens [FCKR]
836302
836227
-
Lys
CTT
[ENA]
¡û
>W1710204587
FCLY01000001
Gammaproteobacteria
Serratia marcescens [FCLY]
962103
962178
+
Lys
CTT
[ENA]
¡û
>W1710478628
FKZE01000009
Gammaproteobacteria
Klebsiella oxytoca [FKZE]
27553
27628
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK