This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456332 (109 seq.)
>W1711187557
LWPO01000089
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
25656
25731
+
Lys
CTT
[ENA]
¡û
>W1711378001
MDZJ01000001
Gammaproteobacteria
Yersinia ruckeri [MDZJ]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378140
MDZK01000081
Gammaproteobacteria
Yersinia ruckeri [MDZK]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378211
MDZL01000085
Gammaproteobacteria
Yersinia ruckeri [MDZL]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378283
MDZM01000083
Gammaproteobacteria
Yersinia ruckeri [MDZM]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378313
MDZN01000013
Gammaproteobacteria
Yersinia ruckeri [MDZN]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711378421
MDZO01000086
Gammaproteobacteria
Yersinia ruckeri [MDZO]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378494
MDZP01000085
Gammaproteobacteria
Yersinia ruckeri [MDZP]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378568
MDZQ01000082
Gammaproteobacteria
Yersinia ruckeri [MDZQ]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378648
MDZR01000080
Gammaproteobacteria
Yersinia ruckeri [MDZR]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378661
MDZS01000039
Gammaproteobacteria
Yersinia ruckeri [MDZS]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378792
MDZT01000076
Gammaproteobacteria
Yersinia ruckeri [MDZT]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378860
MDZU01000103
Gammaproteobacteria
Yersinia ruckeri [MDZU]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711378940
MDZV01000050
Gammaproteobacteria
Yersinia ruckeri [MDZV]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379013
MDZW01000079
Gammaproteobacteria
Yersinia ruckeri [MDZW]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379086
MDZX01000076
Gammaproteobacteria
Yersinia ruckeri [MDZX]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379166
MDZY01000078
Gammaproteobacteria
Yersinia ruckeri [MDZY]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379237
MDZZ01000079
Gammaproteobacteria
Yersinia ruckeri [MDZZ]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379314
MEAA01000072
Gammaproteobacteria
Yersinia ruckeri [MEAA]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379381
MEAB01000078
Gammaproteobacteria
Yersinia ruckeri [MEAB]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379421
MEAC01000014
Gammaproteobacteria
Yersinia ruckeri [MEAC]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711379479
MEAD01000002
Gammaproteobacteria
Yersinia ruckeri [MEAD]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379618
MEAE01000103
Gammaproteobacteria
Yersinia ruckeri [MEAE]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379627
MEAF01000001
Gammaproteobacteria
Yersinia ruckeri [MEAF]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379777
MEAG01000084
Gammaproteobacteria
Yersinia ruckeri [MEAG]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379781
MEAH01000001
Gammaproteobacteria
Yersinia ruckeri [MEAH]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711379923
MEAI01000085
Gammaproteobacteria
Yersinia ruckeri [MEAI]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711380003
MEAJ01000082
Gammaproteobacteria
Yersinia ruckeri [MEAJ]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711380035
MEAK01000016
Gammaproteobacteria
Yersinia ruckeri [MEAK]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711380122
MEAL01000033
Gammaproteobacteria
Yersinia ruckeri [MEAL]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711380250
MEAM01000077
Gammaproteobacteria
Yersinia ruckeri [MEAM]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711380325
MEAN01000083
Gammaproteobacteria
Yersinia ruckeri [MEAN]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711380409
MEAO01000076
Gammaproteobacteria
Yersinia ruckeri [MEAO]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711380486
MEAP01000076
Gammaproteobacteria
Yersinia ruckeri [MEAP]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711382129
MEBS01000016
Gammaproteobacteria
Yersinia ruckeri [MEBS]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711382212
MEBT01000015
Gammaproteobacteria
Yersinia ruckeri [MEBT]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711382292
MEBU01000015
Gammaproteobacteria
Yersinia ruckeri [MEBU]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711382381
MEBV01000050
Gammaproteobacteria
Yersinia ruckeri [MEBV]
21349
21424
+
Lys
CTT
[ENA]
¡û
>W1711382420
MEBW01000014
Gammaproteobacteria
Yersinia ruckeri [MEBW]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711382520
MEBX01000044
Gammaproteobacteria
Yersinia ruckeri [MEBX]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711382590
MEBY01000016
Gammaproteobacteria
Yersinia ruckeri [MEBY]
19950
20025
+
Lys
CTT
[ENA]
¡û
>W1711382709
MEBZ01000079
Gammaproteobacteria
Yersinia ruckeri [MEBZ]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711382760
MECA01000033
Gammaproteobacteria
Yersinia ruckeri [MECA]
19906
19981
+
Lys
CTT
[ENA]
¡û
>W1711382839
MECB01000033
Gammaproteobacteria
Yersinia ruckeri [MECB]
19906
19981
+
Lys
CTT
[ENA]
¡û
>W1711382926
MECC01000054
Gammaproteobacteria
Yersinia ruckeri [MECC]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711383018
MECD01000087
Gammaproteobacteria
Yersinia ruckeri [MECD]
19883
19958
+
Lys
CTT
[ENA]
¡û
>W1711383072
MECE01000027
Gammaproteobacteria
Yersinia ruckeri [MECE]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711383182
MECF01000077
Gammaproteobacteria
Yersinia ruckeri [MECF]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711383186
MECG01000001
Gammaproteobacteria
Yersinia ruckeri [MECG]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711383260
MECH01000001
Gammaproteobacteria
Yersinia ruckeri [MECH]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711383412
MECI01000079
Gammaproteobacteria
Yersinia ruckeri [MECI]
19861
19936
+
Lys
CTT
[ENA]
¡û
>W1711487099
MKFJ01000048
Gammaproteobacteria
Yersinia ruckeri [MKFJ]
125864
125939
+
Lys
CTT
[ENA]
¡û
>W1712109957
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
2903800
2903875
+
Lys
CTT
[ENA]
¡û
>C171058869
CP017236
Gammaproteobacteria
Yersinia ruckeri QMA0440 [CP017236]
1464203
1464278
+
Lys
CTT
-
¡û
>w010811
AALC01000027
Gammaproteobacteria
Yersinia bercovieri ATCC 43970 [AALC]
39765
39842
+
Lys
CTT
[ENA]
¡û
>WENV180137783
OATP01000496
[OATP] human gut metagenome; faeces
6211
6286
+
Lys
CTT
[ENA]
¢þ
>WENV180143658
OATY01000032
[OATY] human gut metagenome; faeces
55007
55082
+
Lys
CTT
[ENA]
¢þ
>WENV180211682
OBAM01013804
[OBAM] human gut metagenome; human gut
333
258
-
Lys
CTT
[ENA]
¢þ
>WENV183370909
OLXV01002479
[OLXV] human gut metagenome; feces
1057
982
-
Lys
CTT
[ENA]
¢þ
>W141350062
JCKH01000018
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
25918
25993
+
Lys
CTT
[ENA]
¡û
>WENV183521831
OMNU01036671
[OMNU] human gut metagenome; feces
909
984
+
Lys
CTT
[ENA]
¢þ
>C181002149
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1771078
1771153
+
Lys
CTT
-
¡û
>C181055067
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1756938
1757013
+
Lys
CTT
-
¡û
>C181077030
CP023184
Gammaproteobacteria
Yersinia ruckeri NHV_3758 [CP023184]
2338592
2338517
-
Lys
CTT
-
¡û
>C181123234
CP025800
Gammaproteobacteria
Yersinia ruckeri SC09 [CP025800]
2847817
2847892
+
Lys
CTT
-
¡û
>C191152016
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1763387
1763462
+
Lys
CTT
-
¡û
>W09117418
ACCC01000058
Gammaproteobacteria
Yersinia ruckeri ATCC 29473 [ACCC]
13702
13777
+
Lys
CTT
[ENA]
¡û
>W141710505
JMPK01000047
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
48058
48133
+
Lys
CTT
[ENA]
¡û
>W141802343
JPFO01000001
Gammaproteobacteria
Yersinia ruckeri [JPFO]
19916
19991
+
Lys
CTT
[ENA]
¡û
>W141808155
JPPT01000001
Gammaproteobacteria
Yersinia ruckeri ATCC 29473 [JPPT]
336330
336255
-
Lys
CTT
[ENA]
¡û
>W1910211901
FMIQ01000006
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
139464
139539
+
Lys
CTT
[ENA]
¡û
>W1911179133
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
759530
759605
+
Lys
CTT
[ENA]
¡û
>W1911397636
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
3800461
3800386
-
Lys
CTT
[ENA]
¡û
>W1810032550
BGWW01000006
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
24969
25044
+
Lys
CTT
[ENA]
¡û
>W1810075277
PEHK01000026
Gammaproteobacteria
Yersinia ruckeri SCPM-O-B-8085 [PEHK]
15310
15235
-
Lys
CTT
[ENA]
¡û
>W1810075456
PEHN01000004
Gammaproteobacteria
Yersinia bercovieri SCPM-O-B-7607 [PEHN]
44619
44544
-
Lys
CTT
[ENA]
¡û
>W1810758383
QPIR01000112
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
6331
6256
-
Lys
CTT
[ENA]
¡û
>W1810758449
QPIS01000111
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
6331
6256
-
Lys
CTT
[ENA]
¡û
>W1810758508
QPIT01000070
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
6331
6256
-
Lys
CTT
[ENA]
¡û
>W1810758569
QPIU01000070
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
27129
27204
+
Lys
CTT
[ENA]
¡û
>W1810758624
QPIV01000070
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
6331
6256
-
Lys
CTT
[ENA]
¡û
>W1810784872
QRAZ01002945
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
6331
6256
-
Lys
CTT
[ENA]
¡û
>C151053521
CP009539
Gammaproteobacteria
Yersinia ruckeri YRB [CP009539]
700417
700342
-
Lys
CTT
[Ensembl]
¡û
>C151057762
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
1943129
1943204
+
Lys
CTT
[Ensembl]
¡û
>C151076441
CP011078
Gammaproteobacteria
Yersinia ruckeri Big Creek 74 [CP011078]
755002
754927
-
Lys
CTT
[Ensembl]
¡û
>C151088678
CP011975
Gammaproteobacteria
Yersinia aleksiciae 159 [CP011975]
130746
130671
-
Lys
CTT
[Ensembl]
¡û
>W1510061732
CCYO01000017
Gammaproteobacteria
Yersinia ruckeri CSF007-82 [CCYO]
15309
15234
-
Lys
CTT
[ENA]
¡û
>W1510139465
CGBH01000010
Gammaproteobacteria
Yersinia bercovieri FE80217 [CGBH]
69120
69195
+
Lys
CTT
[ENA]
¡û
>W1510139620
CGBL01000001
Gammaproteobacteria
Yersinia aleksiciae 404/81 [CGBL]
322440
322365
-
Lys
CTT
[ENA]
¡û
>W1510205529
CHYZ01000002
Gammaproteobacteria
Yersinia bercovieri 3016/84 [CHYZ]
125555
125480
-
Lys
CTT
[ENA]
¡û
>W1510453592
CPUZ01000002
Gammaproteobacteria
Yersinia ruckeri OMBL4 [CPUZ]
82981
82906
-
Lys
CTT
[ENA]
¡û
>W1510457875
CPYD01000004
Gammaproteobacteria
Yersinia nurmii type strain: CIP110231 [CPYD]
102262
102337
+
Lys
CTT
[ENA]
¡û
>W1510462768
CQBN01000013
Gammaproteobacteria
Yersinia ruckeri RS41 [CQBN]
97667
97742
+
Lys
CTT
[ENA]
¡û
>W1510463191
CQBU01000001
Gammaproteobacteria
Yersinia bercovieri 127/84 [CQBU]
89072
88997
-
Lys
CTT
[ENA]
¡û
>W1510467000
CQEM01000003
Gammaproteobacteria
Yersinia aleksiciae IP27925 [CQEM]
276956
277031
+
Lys
CTT
[ENA]
¡û
>W11113846
ADCU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
862987
863062
+
Lys
CTT
[ENA]
¡û
>W1511358277
JRWX01000026
Gammaproteobacteria
Yersinia ruckeri SC09 [JRWX]
39153
39078
-
Lys
CTT
[ENA]
¡û
>W1511399535
JTET01000015
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
583083
583158
+
Lys
CTT
[ENA]
¡û
>W1511399644
JTEU02000024
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
61201
61276
+
Lys
CTT
[ENA]
¡û
>W1511474608
JWBZ01000200
Gammaproteobacteria
Hafnia paralvei 1133_RAQU [JWBZ]
1593
1518
-
Lys
CTT
[ENA]
¡û
>W1511478154
JWGZ01000036
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
15057
14982
-
Lys
CTT
[ENA]
¡û
>W1511586361
LAZF01000010
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
299817
299742
-
Lys
CTT
[ENA]
¡û
>W1511586459
LAZG01000020
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
188814
188739
-
Lys
CTT
[ENA]
¡û
>C161065259
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
3767890
3767815
-
Lys
CTT
-
¡û
>C161074186
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
3002913
3002988
+
Lys
CTT
-
¡û
>C161086852
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
4309701
4309626
-
Lys
CTT
-
¡û
>W121008418
AGCI01000098
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
1708
1633
-
Lys
CTT
[ENA]
¡û
>W1610994672
LXET01000044
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
41437
41362
-
Lys
CTT
[ENA]
¡û
>W1610994994
LXEX01000061
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
604705
604780
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK