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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456345 (39 seq.)
>W1711183472
LWLB01000001
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
148857
148784
-
Trp
CCA
[ENA]
¡û
>W1711346041
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
5859621
5859694
+
Trp
CCA
[ENA]
¡û
>C171070714
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
711548
711621
+
Trp
CCA
-
¡û
>W131053504
ANAC01000022
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
74168
74093
-
Trp
CCA
[ENA]
¡û
>W131053578
ANAE01000083
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
15443
15368
-
Trp
CCA
[ENA]
¡û
>W131054612
ANAW01000217
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
92577
92650
+
Trp
CCA
[ENA]
¡û
>W131054667
ANAX01000335
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
1514
1439
-
Trp
CCA
[ENA]
¡û
>W131054736
ANAZ01000001
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
74341
74266
-
Trp
CCA
[ENA]
¡û
>W131054815
ANBA01000013
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
335651
335726
+
Trp
CCA
[ENA]
¡û
>W131054927
ANBC01000295
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
12277
12350
+
Trp
CCA
[ENA]
¡û
>W131054972
ANBD01000047
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
19101
19176
+
Trp
CCA
[ENA]
¡û
>W131055118
ANBF01000181
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
12405
12478
+
Trp
CCA
[ENA]
¡û
>W131179364
ARMI01000045
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
50473
50546
+
Trp
CCA
[ENA]
¡û
>W141219665
AZXF01000005
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
53317
53242
-
Trp
CCA
[ENA]
¡û
>W141236332
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
154776
154701
-
Trp
CCA
[ENA]
¡û
>WENV170010718
APMI01026060
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1103
1178
+
Trp
CCA
[ENA]
¢þ
>WENV170011930
APMI01104042
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
75
2
-
Trp
CCA
[ENA]
¢þ
>W09109547
ABUI01000003
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
135490
135417
-
Trp
CCA
[ENA]
¡û
>C181064842
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
721693
721766
+
Trp
CCA
-
¡û
>C181200536
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2235282
2235209
-
Trp
CCA
-
¡û
>C191212891
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4835943
4836016
+
Trp
CCA
-
¡û
>W1910285480
FRFF01000169
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
162644
162717
+
Trp
CCA
[ENA]
¡û
>W1911709945
QPNC01000023
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
78454
78381
-
Trp
CCA
[ENA]
¡û
>W1810046860
NYMS01000048
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
479041
479114
+
Trp
CCA
[ENA]
¡û
>W1810367965
PVZC01000003
Actinomycetota
Allonocardiopsis opalescens DSM 45601 [PVZC]
592736
592809
+
Trp
CCA
[ENA]
¡û
>W1810608316
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
290992
291065
+
Trp
CCA
[ENA]
¡û
>W1810756403
QPFC01000085
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
115
42
-
Trp
CCA
[ENA]
¡û
>W1511568529
LAJC01000040
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
8308
8383
+
Trp
CCA
[ENA]
¡û
>W1511656830
LEKI01000111
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
14525
14598
+
Trp
CCA
[ENA]
¡û
>W1511697712
LGEC01000089
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
26307
26380
+
Trp
CCA
[ENA]
¡û
>C121001874
CP002041
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
255509
255582
+
Trp
CCA
[Ensembl]
¡û
>W1610068902
BCRR01000019
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
20495
20568
+
Trp
CCA
[ENA]
¡û
>W1610069191
BCSH01000002
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
92884
92959
+
Trp
CCA
[ENA]
¡û
>W121126443
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
371668
371741
+
Trp
CCA
[ENA]
¡û
>C131006721
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2790575
2790650
+
Trp
CCA
[Ensembl]
¡û
>W1710066275
BCRR01000019
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
20495
20568
+
Trp
CCA
[ENA]
¡û
>W1710066564
BCSH01000002
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
92884
92959
+
Trp
CCA
[ENA]
¡û
>W1710555143
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
658405
658478
+
Trp
CCA
[ENA]
¡û
>W1710588531
FQZK01000020
Actinomycetota
Nocardiopsis flavescens [FQZK]
26609
26682
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK