This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456373 (43 seq.)
>W1711385108
MEDS01000010
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
73556
73481
-
Asn
GTT
[ENA]
¡û
>W1711385109
MEDS01000010
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
73438
73363
-
Asn
GTT
[ENA]
¡û
>W1711386857
MEFV01000013
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
6000
5925
-
Asn
GTT
[ENA]
¡û
>W1711502140
MKSJ01000225
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
559
484
-
Asn
GTT
[ENA]
¡û
>W1711502141
MKSJ01000225
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
440
365
-
Asn
GTT
[ENA]
¡û
>W1711504560
MKUR01000030
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
21971
22046
+
Asn
GTT
[ENA]
¡û
>W1711504561
MKUR01000030
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
22091
22166
+
Asn
GTT
[ENA]
¡û
>C171083820
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
1303002
1303077
+
Asn
GTT
-
¡û
>C171094232
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
1240224
1240299
+
Asn
GTT
-
¡û
>C171094942
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
2414362
2414287
-
Asn
GTT
-
¡û
>C171094947
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
1570428
1570353
-
Asn
GTT
-
¡û
>W131239380
BANP01000023
Betaproteobacteria
Acidovorax sp. MR-S7 [BANP]
128133
128208
+
Asn
GTT
[ENA]
¡û
>C000367
CP000539
Betaproteobacteria
Acidovorax sp. JS42 [CP000539]
2435001
2435076
+
Asn
GTT
[Ensembl]
¡û
>WENV181308046
OFIS01000154
[OFIS] sludge metagenome; sludge
57357
57432
+
Asn
GTT
[ENA]
¢þ
>WENV181311169
OFJB01000103
[OFJB] sludge metagenome; sludge
34841
34766
-
Asn
GTT
[ENA]
¢þ
>WENV181378650
OFRB01043297
[OFRB] wastewater metagenome; Exp Tend CN 0WW
126
201
+
Asn
GTT
[ENA]
¢þ
>WENV181379059
OFRC01014102
[OFRC] wastewater metagenome; Exp Tend CN 10WW
361
436
+
Asn
GTT
[ENA]
¢þ
>WENV181401709
OFTX01003472
[OFTX] sludge metagenome; sludge
1872
1797
-
Asn
GTT
[ENA]
¢þ
>WENV181402267
OFTY01000394
[OFTY] sludge metagenome; sludge
18350
18425
+
Asn
GTT
[ENA]
¢þ
>WENV181402268
OFTY01000394
[OFTY] sludge metagenome; sludge
18471
18546
+
Asn
GTT
[ENA]
¢þ
>W141169072
AXVM01000016
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
10171
10246
+
Asn
GTT
[ENA]
¡û
>W141169073
AXVM01000016
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
10290
10365
+
Asn
GTT
[ENA]
¡û
>WENV181882738
OGXI01000319
[OGXI] human gut metagenome; faeces
28059
27984
-
Asn
GTT
[ENA]
¢þ
>WENV181929456
OGYO01025382
[OGYO] human gut metagenome; faeces
1587
1512
-
Asn
GTT
[ENA]
¢þ
>WENV181973063
OHAA01009588
[OHAA] human gut metagenome; faeces
548
623
+
Asn
GTT
[ENA]
¢þ
>WENV182610196
OJJV01064097
[OJJV] metagenome; faeces
431
356
-
Asn
GTT
[ENA]
¢þ
>WENV183086697
OLJF01076012
[OLJF] metagenome; faeces
400
325
-
Asn
GTT
[ENA]
¢þ
>WENV183331329
OLWB01105792
[OLWB] human gut metagenome; faeces
533
458
-
Asn
GTT
[ENA]
¢þ
>WENV170070931
CDZQ01040753
[CDZQ] gut metagenome; human stools
1702
1627
-
Asn
GTT
[ENA]
¢þ
>C181018985
CP016278
Betaproteobacteria
Diaphorobacter nitroreducens SL-205 [CP016278]
1376779
1376854
+
Asn
GTT
-
¡û
>W09105934
AASD01000003
Betaproteobacteria
Acidovorax sp. JS42 [AASD]
60012
60087
+
Asn
GTT
[ENA]
¡û
>W09117952
ACCM01000007
Betaproteobacteria
[Acidovorax] ebreus TPSY [ACCM]
218025
218100
+
Asn
GTT
[ENA]
¡û
>W09119201
ACDP01000010
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
37322
37247
-
Asn
GTT
[ENA]
¡û
>W09119241
ACDQ01000009
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
29361
29286
-
Asn
GTT
[ENA]
¡û
>C09104077
CP001392
Betaproteobacteria
[Acidovorax] ebreus TPSY [CP001392]
1664907
1664832
-
Asn
GTT
[Ensembl]
¡û
>W1910803607
MTBE01000030
Betaproteobacteria
Diaphorobacter sp. LR2014-1 [MTBE]
29996
30071
+
Asn
GTT
[ENA]
¡û
>W1810659721
QJKI01000002
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
113278
113353
+
Asn
GTT
[ENA]
¡û
>W1810659730
QJKI01000004
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
113237
113312
+
Asn
GTT
[ENA]
¡û
>W1511390754
JSYI01000045
Betaproteobacteria
Diaphorobacter sp. J5-51 [JSYI]
183
108
-
Asn
GTT
[ENA]
¡û
>W1610042833
BAZJ01000087
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
4983
5058
+
Asn
GTT
[ENA]
¡û
>W1710039993
BAZJ01000087
Betaproteobacteria
Diaphorobacter nitroreducens JCM 11421 [BAZJ]
4983
5058
+
Asn
GTT
[ENA]
¡û
>W1710583658
FQUZ01000008
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
3626
3701
+
Asn
GTT
[ENA]
¡û
>W1710583659
FQUZ01000008
Betaproteobacteria
Lampropedia hyalina DSM 16112 [FQUZ]
3758
3833
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK