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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456397 (56 seq.)
>W1711115566
LUAH01000031
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
115398
115471
+
Lys
CTT
[ENA]
¡û
>W1711712758
MTCM01000002
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
866195
866268
+
Lys
CTT
[ENA]
¡û
>C171089549
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
237155
237080
-
Lys
CTT
-
¡û
>C171118462
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
6272752
6272679
-
Lys
CTT
-
¡û
>W131205458
ATDL01000016
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
33356
33429
+
Lys
CTT
[ENA]
¡û
>WENV183726825
PJTO01000214
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
9603
9676
+
Lys
CTT
[ENA]
¢þ
>WENV183727765
PJTP01000173
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
9603
9676
+
Lys
CTT
[ENA]
¢þ
>WENV183728861
PJTQ01000757
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
9655
9728
+
Lys
CTT
[ENA]
¢þ
>WENV183729744
PJTR01000042
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
35427
35354
-
Lys
CTT
[ENA]
¢þ
>WENV183731261
PJTS01028834
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
74
1
-
Lys
CTT
[ENA]
¢þ
>WENV183731619
PJTT01000062
[PJTT] soil metagenome; Soil (2) enriched on wood chips
35427
35354
-
Lys
CTT
[ENA]
¢þ
>WENV183732376
PJTX01000066
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
16153
16226
+
Lys
CTT
[ENA]
¢þ
>WENV183733038
PJTY01000027
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
178253
178326
+
Lys
CTT
[ENA]
¢þ
>WENV183734050
PJTZ01000030
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
178253
178326
+
Lys
CTT
[ENA]
¢þ
>WENV183735011
PJUA01000369
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
9405
9478
+
Lys
CTT
[ENA]
¢þ
>WENV183735158
PJUA01001486
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1080
1007
-
Lys
CTT
[ENA]
¢þ
>WENV183735632
PJUB01000267
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
9384
9457
+
Lys
CTT
[ENA]
¢þ
>WENV183735939
PJUB01014870
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
486
559
+
Lys
CTT
[ENA]
¢þ
>WENV183736122
PJUC01000037
[PJUC] soil metagenome; Soil enriched on filter paper
114072
113999
-
Lys
CTT
[ENA]
¢þ
>WENV183736507
PJUC01007434
[PJUC] soil metagenome; Soil enriched on filter paper
490
563
+
Lys
CTT
[ENA]
¢þ
>WENV183736563
PJUC01013464
[PJUC] soil metagenome; Soil enriched on filter paper
3
76
+
Lys
CTT
[ENA]
¢þ
>WENV183736600
PJUC01019735
[PJUC] soil metagenome; Soil enriched on filter paper
97
24
-
Lys
CTT
[ENA]
¢þ
>WENV183736857
PJUD01000059
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
83699
83772
+
Lys
CTT
[ENA]
¢þ
>WENV183736965
PJUD01000136
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
49031
48958
-
Lys
CTT
[ENA]
¢þ
>WENV183738646
PJUE01000058
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
83699
83772
+
Lys
CTT
[ENA]
¢þ
>WENV183738936
PJUE01000528
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
21508
21435
-
Lys
CTT
[ENA]
¢þ
>WENV183740330
PJUF01001209
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
11998
12071
+
Lys
CTT
[ENA]
¢þ
>WENV183741540
PJUG01000051
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
106568
106641
+
Lys
CTT
[ENA]
¢þ
>WENV183742000
PJUH01000037
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
106568
106641
+
Lys
CTT
[ENA]
¢þ
>WENV183742723
PJUI01000073
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
106568
106641
+
Lys
CTT
[ENA]
¢þ
>WENV183743145
PJUJ01000053
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
106568
106641
+
Lys
CTT
[ENA]
¢þ
>WENV183743949
PJUK01000056
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
106568
106641
+
Lys
CTT
[ENA]
¢þ
>C181225980
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
4585063
4584990
-
Lys
CTT
-
¡û
>C191157534
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
4323388
4323315
-
Lys
CTT
-
¡û
>C191158014
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
95827
95900
+
Lys
CTT
-
¡û
>C191221558
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
4628364
4628291
-
Lys
CTT
-
¡û
>C191222282
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
1819467
1819540
+
Lys
CTT
-
¡û
>W09123565
ACHA01000050
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
22335
22262
-
Lys
CTT
[ENA]
¡û
>W09123627
ACHB01000079
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
184150
184223
+
Lys
CTT
[ENA]
¡û
>W141701987
JMLD01000019
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
107756
107829
+
Lys
CTT
[ENA]
¡û
>W1910377909
FUKU01000013
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
495242
495315
+
Lys
CTT
[ENA]
¡û
>W1910664396
MCAQ01000027
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
52549
52476
-
Lys
CTT
[ENA]
¡û
>W1911136235
NOUX01000010
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
74441
74368
-
Lys
CTT
[ENA]
¡û
>W1911136270
NOUY01000013
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
43440
43367
-
Lys
CTT
[ENA]
¡û
>W1810002566
BEYR01000004
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
415387
415460
+
Lys
CTT
[ENA]
¡û
>W1810069020
PEAZ01000039
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
53159
53232
+
Lys
CTT
[ENA]
¡û
>W1810069063
PEBA01000003
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
89836
89763
-
Lys
CTT
[ENA]
¡û
>W1810405010
PYLS01000004
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
344545
344472
-
Lys
CTT
[ENA]
¡û
>W1810531931
QCXX01000005
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
414691
414764
+
Lys
CTT
[ENA]
¡û
>W1511108315
JJMU01000024
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
193393
193318
-
Lys
CTT
[ENA]
¡û
>W1511352477
JROE01000004
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
787481
787556
+
Lys
CTT
[ENA]
¡û
>W1511590271
LBGU01000033
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
52711
52786
+
Lys
CTT
[ENA]
¡û
>W1710521470
FNGK01000005
Bacteroidota
Sphingobacterium mizutaii [FNGK]
107259
107184
-
Lys
CTT
[ENA]
¡û
>W1710538695
FNUT01000007
Bacteroidota
Sphingobacterium lactis [FNUT]
256871
256944
+
Lys
CTT
[ENA]
¡û
>W1710603654
FUZF01000022
Bacteroidota
Sphingobacterium nematocida [FUZF]
36943
37018
+
Lys
CTT
[ENA]
¡û
>W1710608357
FXAU01000005
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
94818
94891
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK