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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456412 (80 seq.)
>W1710931999
LOHU01000066
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
1476
1401
-
Met
CAT
[ENA]
¡û
>W1711258965
LYUZ01000083
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
15930
16005
+
Met
CAT
[ENA]
¡û
>w012527
AAMO01000004
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
310680
310608
-
Met
CAT
[ENA]
¡û
>C171092081
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
144478
144403
-
Met
CAT
-
¡û
>W141151418
AXBB01000001
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
1164009
1164084
+
Met
CAT
[ENA]
¡û
>W141151548
AXBD01000002
Alphaproteobacteria
Leisingera daeponensis DSM 23529 [AXBD]
732796
732721
-
Met
CAT
[ENA]
¡û
>W141151616
AXBE01000004
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
61629
61554
-
Met
CAT
[ENA]
¡û
>W141151807
AXBI01000017
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
3005089
3005014
-
Met
CAT
[ENA]
¡û
>W08005790
ABIE01000003
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
259372
259447
+
Met
CAT
[ENA]
¡û
>W08005838
ABIF01000001
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
115751
115679
-
Met
CAT
[ENA]
¡û
>WENV170962137
MRWF01007102
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
34098
34173
+
Met
CAT
[ENA]
¢þ
>WENV170963028
MRWG01000004
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
454174
454249
+
Met
CAT
[ENA]
¢þ
>C181008430
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
2117008
2117083
+
Met
CAT
-
¡û
>C181008512
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
1379623
1379548
-
Met
CAT
-
¡û
>C181008544
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
2032274
2032349
+
Met
CAT
-
¡û
>C181008626
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
1389438
1389363
-
Met
CAT
-
¡û
>C181008683
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
1391339
1391264
-
Met
CAT
-
¡û
>C181008740
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
1354029
1353954
-
Met
CAT
-
¡û
>C181008775
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
1992170
1992245
+
Met
CAT
-
¡û
>C181008853
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
1788740
1788665
-
Met
CAT
-
¡û
>C181008913
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
1320256
1320181
-
Met
CAT
-
¡û
>C181008970
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
1363853
1363778
-
Met
CAT
-
¡û
>C181009003
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
1779873
1779948
+
Met
CAT
-
¡û
>C181009084
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
1391114
1391039
-
Met
CAT
-
¡û
>C181009141
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
1381240
1381165
-
Met
CAT
-
¡û
>C181009175
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
2151260
2151335
+
Met
CAT
-
¡û
>C181009256
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
1324583
1324508
-
Met
CAT
-
¡û
>C181009313
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
1320256
1320181
-
Met
CAT
-
¡û
>C181009370
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
1405916
1405841
-
Met
CAT
-
¡û
>C181009404
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
2050625
2050700
+
Met
CAT
-
¡û
>C181009486
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
1310562
1310487
-
Met
CAT
-
¡û
>C181009543
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
1437469
1437394
-
Met
CAT
-
¡û
>C181009599
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
1408081
1408006
-
Met
CAT
-
¡û
>C181009656
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
1432264
1432189
-
Met
CAT
-
¡û
>C181009713
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
1425767
1425692
-
Met
CAT
-
¡û
>C181009770
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
1389437
1389362
-
Met
CAT
-
¡û
>C181009803
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
2032274
2032349
+
Met
CAT
-
¡û
>C181009885
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
1324040
1323965
-
Met
CAT
-
¡û
>C181009919
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
2115842
2115917
+
Met
CAT
-
¡û
>C181010000
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
1320256
1320181
-
Met
CAT
-
¡û
>C181048979
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
2062635
2062710
+
Met
CAT
-
¡û
>C181049036
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
2062635
2062710
+
Met
CAT
-
¡û
>C191083170
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
1369340
1369265
-
Met
CAT
-
¡û
>C191083226
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
1449455
1449380
-
Met
CAT
-
¡û
>C191083284
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
550509
550434
-
Met
CAT
-
¡û
>C191141118
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
2309396
2309471
+
Met
CAT
-
¡û
>C191158467
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
2286983
2287058
+
Met
CAT
-
¡û
>W09112085
ABXM01000005
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
293515
293590
+
Met
CAT
[ENA]
¡û
>C141011182
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
2116873
2116948
+
Met
CAT
[Ensembl]
¡û
>W1910549364
FZPF01000007
Alphaproteobacteria
Jannaschia aquimarina DSM 28248 [FZPF]
14032
13958
-
Met
CAT
[ENA]
¡û
>W1911538452
OMOJ01000003
Alphaproteobacteria
Pseudoprimorskyibacter insulae CECT 8871 [OMOJ]
99893
99968
+
Met
CAT
[ENA]
¡û
>W1911696499
QMEJ01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
104170
104096
-
Met
CAT
[ENA]
¡û
>W1810577997
QEOS01000001
Alphaproteobacteria
Phaeobacter sp. JL2872 JL2872 [QEOS]
747857
747932
+
Met
CAT
[ENA]
¡û
>W1510650434
CVQZ01000009
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
456508
456433
-
Met
CAT
[ENA]
¡û
>W1510650729
CVRL01000025
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
161449
161374
-
Met
CAT
[ENA]
¡û
>W1510650771
CVRM01000011
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
456508
456433
-
Met
CAT
[ENA]
¡û
>W1511388753
JSWJ01000003
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
155993
155918
-
Met
CAT
[ENA]
¡û
>W1511388799
JSWK01000001
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
25902
25827
-
Met
CAT
[ENA]
¡û
>W1511482558
JWLC01000008
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
135915
135840
-
Met
CAT
[ENA]
¡û
>W1511482615
JWLD01000019
Alphaproteobacteria
Leisingera sp. ANG-Vp [JWLD]
2091
2166
+
Met
CAT
[ENA]
¡û
>W1511482662
JWLE01000001
Alphaproteobacteria
Leisingera sp. ANG-DT [JWLE]
292016
291941
-
Met
CAT
[ENA]
¡û
>W1511482705
JWLF01000002
Alphaproteobacteria
Leisingera sp. ANG-S3 [JWLF]
291715
291640
-
Met
CAT
[ENA]
¡û
>W1511482789
JWLG01000017
Alphaproteobacteria
Leisingera sp. ANG-M6 [JWLG]
27883
27808
-
Met
CAT
[ENA]
¡û
>W1511482815
JWLH01000003
Alphaproteobacteria
Leisingera sp. ANG-S5 [JWLH]
290319
290244
-
Met
CAT
[ENA]
¡û
>W1511482848
JWLI01000001
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
123821
123896
+
Met
CAT
[ENA]
¡û
>W1511483045
JWLM01000009
Alphaproteobacteria
Leisingera sp. ANG-S [JWLM]
40288
40213
-
Met
CAT
[ENA]
¡û
>W1511524542
JYFE01000020
Alphaproteobacteria
Jannaschia aquimarina GSW-M26 [JYFE]
10771
10696
-
Met
CAT
[ENA]
¡û
>W1511583789
LAUK01000001
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
458036
457961
-
Met
CAT
[ENA]
¡û
>W11157638
AFCF01000060
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
5201
5126
-
Met
CAT
[ENA]
¡û
>C121003815
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
1449393
1449318
-
Met
CAT
[Ensembl]
¡û
>C121003873
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
1369344
1369269
-
Met
CAT
-
¡û
>C161083474
CP015124
Alphaproteobacteria
Phaeobacter gallaeciensis JL2886 [CP015124]
3965236
3965161
-
Met
CAT
-
¡û
>W1610016144
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
193703
193778
+
Met
CAT
[ENA]
¡û
>W1610789468
LOHU01000066
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
1476
1401
-
Met
CAT
[ENA]
¡û
>W1611021230
LYUZ01000083
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
15930
16005
+
Met
CAT
[ENA]
¡û
>W1710013035
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
193703
193778
+
Met
CAT
[ENA]
¡û
>W1710512990
FMZV01000001
Alphaproteobacteria
Ruegeria marina [FMZV]
113504
113429
-
Met
CAT
[ENA]
¡û
>W1710541218
FNYD01000014
Alphaproteobacteria
Cribrihabitans marinus [FNYD]
25801
25876
+
Met
CAT
[ENA]
¡û
>W1710562463
FOOZ01000001
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
456548
456473
-
Met
CAT
[ENA]
¡û
>W1710568482
FOTQ01000004
Alphaproteobacteria
Shimia aestuarii [FOTQ]
282828
282753
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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