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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456496 (63 seq.)
>W1710796660
LJSH01000003
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
94898
94973
+
Phe
GAA
[ENA]
¡û
>W1710864435
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
3654197
3654122
-
Phe
GAA
[ENA]
¡û
>W1710864641
LMGA01000001
Alphaproteobacteria
Mesorhizobium sp. Root554 [LMGA]
3653450
3653375
-
Phe
GAA
[ENA]
¡û
>W1710914764
LNTU01000023
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
69697
69772
+
Phe
GAA
[ENA]
¡û
>W1711253113
LYPK01000011
Alphaproteobacteria
Rhizobium bangladeshense [LYPK]
78358
78433
+
Phe
GAA
[ENA]
¡û
>W1711253246
LYPN01000003
Alphaproteobacteria
Rhizobium bangladeshense [LYPN]
6695
6620
-
Phe
GAA
[ENA]
¡û
>C171114603
CP020906
Alphaproteobacteria
Rhizobium etli NXC12 [CP020906]
614210
614285
+
Phe
GAA
-
¡û
>C171115023
CP021024
Alphaproteobacteria
Rhizobium sp. TAL182 [CP021024]
629975
630050
+
Phe
GAA
-
¡û
>C171115076
CP021030
Alphaproteobacteria
Rhizobium sp. NXC14 [CP021030]
581135
581210
+
Phe
GAA
-
¡û
>W131046315
AMSI01000028
Alphaproteobacteria
Nitratireductor indicus C115 [AMSI]
13112
13187
+
Phe
GAA
[ENA]
¡û
>W131224293
AUCR01000004
Alphaproteobacteria
Cucumibacter marinus DSM 18995 [AUCR]
36054
36129
+
Phe
GAA
[ENA]
¡û
>C018392
CP000133
Alphaproteobacteria
Rhizobium etli CFN 42 [CP000133]
607869
607944
+
Phe
GAA
[Ensembl]
¡û
>w012832
AAMU01000002
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [AAMU]
95553
95481
-
Phe
GAA
[ENA]
¡û
>WENV180375769
OBOL01069639
[OBOL] marine metagenome; Surface water
437
510
+
Phe
GAA
[ENA]
¢þ
>WENV180386133
OBPB01043807
[OBPB] marine metagenome; Sterile flask
437
512
+
Phe
GAA
[ENA]
¢þ
>WENV180589385
OCOR01050659
[OCOR] marine metagenome; ENVO:00002042
194
269
+
Phe
GAA
[ENA]
¢þ
>WENV181233634
OFET01000021
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
94855
94930
+
Phe
GAA
[ENA]
¢þ
>WENV181234301
OFEU01000025
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
173279
173204
-
Phe
GAA
[ENA]
¢þ
>WENV183741069
PJUF01035071
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1
76
+
Phe
GAA
[ENA]
¢þ
>ENV08002397
ABPT01001183
microbial mat metagenome; Guerrero Negro Hypersaline Mat 05; altitude 310m AMSL; sample depth 1m below water level, 4-5mm depth into the mat
793
718
-
Phe
GAA
[ENA]
¡û
>WENV170652211
JRYH01000097
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1623
1548
-
Phe
GAA
[ENA]
¢þ
>WENV170892750
MDTD01042393
[MDTD] marine metagenome; seawater
29632
29707
+
Phe
GAA
[ENA]
¢þ
>WENV170897896
MDTD01118454
[MDTD] marine metagenome; seawater
2581
2506
-
Phe
GAA
[ENA]
¢þ
>WENV170962719
MRWF01024630
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
4398
4473
+
Phe
GAA
[ENA]
¢þ
>WENV170963815
MRWG01000851
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
824
899
+
Phe
GAA
[ENA]
¢þ
>WENV170964394
MRWG01009888
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2070
2145
+
Phe
GAA
[ENA]
¢þ
>WENV170964449
MRWG01012515
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1165
1090
-
Phe
GAA
[ENA]
¢þ
>C181220382
LT703003
Alphaproteobacteria
Anderseniella sp. Alg231-50 [LT703003, LT703004, LT703005, LT703006, LT703007, LT703008, LT703009, LT703010]
507123
507198
+
Phe
GAA
-
¡û
>C191093770
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
3773661
3773586
-
Phe
GAA
-
¡û
>W141820599
JQMZ01000001
Alphaproteobacteria
Oceanicaulis sp. HL-87 [JQMZ]
2677209
2677134
-
Phe
GAA
[ENA]
¡û
>C141004076
CP005950
Alphaproteobacteria
Rhizobium etli bv. mimosae str. Mim1 [CP005950]
602513
602588
+
Phe
GAA
[Ensembl]
¡û
>W1910831879
MXPU01000010
Alphaproteobacteria
Rhizobium esperanzae CNPSo 668 [MXPU]
6634
6709
+
Phe
GAA
[ENA]
¡û
>W1911148419
NPEV01000030
Alphaproteobacteria
Rhodobium orientis DSM 11290 [NPEV]
57081
57156
+
Phe
GAA
[ENA]
¡û
>W1911409337
NWSU01000009
Alphaproteobacteria
Rhizobium sp. S9 [NWSU]
153655
153580
-
Phe
GAA
[ENA]
¡û
>W1911409565
NWSZ01000020
Alphaproteobacteria
Rhizobium sp. L9 [NWSZ]
14219
14294
+
Phe
GAA
[ENA]
¡û
>W1810064664
PDVP01000015
Alphaproteobacteria
Zhengella mangrovi X9-2-2 [PDVP]
54877
54802
-
Phe
GAA
[ENA]
¡û
>W1810346554
PVBR01000029
Alphaproteobacteria
Phyllobacterium phragmitis 1N-3 [PVBR]
1658
1583
-
Phe
GAA
[ENA]
¡û
>W1810394328
PYBP01000007
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
156430
156505
+
Phe
GAA
[ENA]
¡û
>W1810486982
QAYG01000001
Alphaproteobacteria
Breoghania corrubedonensis DSM 23382 [QAYG]
98353
98428
+
Phe
GAA
[ENA]
¡û
>W1810583943
QEXV01000003
Alphaproteobacteria
Marinicauda salina WD6-1 [QEXV]
306271
306196
-
Phe
GAA
[ENA]
¡û
>W1810887578
QUQO01000002
Alphaproteobacteria
Parvularcula marina SM1705 [QUQO]
6813
6888
+
Phe
GAA
[ENA]
¡û
>C10110146
CP002156
Alphaproteobacteria
Parvularcula bermudensis HTCC2503 [CP002156]
1527911
1527836
-
Phe
GAA
[Ensembl]
¡û
>W1511399864
JTGD01000005
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
16385
16310
-
Phe
GAA
[ENA]
¡û
>W1511541949
JZEX01000134
Alphaproteobacteria
Devosia geojensis BD-c194 [JZEX]
6052
5977
-
Phe
GAA
[ENA]
¡û
>W1511588842
LBCQ01000016
Alphaproteobacteria
Aquamicrobium sp. LC103 LC103 [LBCQ]
112677
112752
+
Phe
GAA
[ENA]
¡û
>C121005227
CP003075
Alphaproteobacteria
Pelagibacterium halotolerans B2 [CP003075]
396306
396381
+
Phe
GAA
[Ensembl]
¡û
>C161056433
CP013490
Alphaproteobacteria
Rhizobium sp. N6212 [CP013490]
633632
633707
+
Phe
GAA
-
¡û
>C161056484
CP013495
Alphaproteobacteria
Rhizobium sp. N621 [CP013495]
633632
633707
+
Phe
GAA
-
¡û
>C161056535
CP013500
Alphaproteobacteria
Rhizobium esperanzae N561 [CP013500]
623376
623451
+
Phe
GAA
-
¡û
>C161056586
CP013505
Alphaproteobacteria
Rhizobium sp. N1341 [CP013505]
623420
623495
+
Phe
GAA
-
¡û
>C161056637
CP013511
Alphaproteobacteria
Rhizobium sp. N1314 [CP013511]
622608
622683
+
Phe
GAA
-
¡û
>C161056688
CP013517
Alphaproteobacteria
Rhizobium sp. N113 [CP013517]
623405
623480
+
Phe
GAA
[Ensembl]
¡û
>C161057402
CP013590
Alphaproteobacteria
Rhizobium sp. N871 [CP013590]
623496
623571
+
Phe
GAA
-
¡û
>C161057453
CP013595
Alphaproteobacteria
Rhizobium sp. N741 [CP013595]
623420
623495
+
Phe
GAA
[Ensembl]
¡û
>C161057504
CP013601
Alphaproteobacteria
Rhizobium sp. N731 [CP013601]
622608
622683
+
Phe
GAA
-
¡û
>W1610660617
LJSH01000003
Alphaproteobacteria
Oceanicaulis sp. HLUCCA04 [LJSH]
94898
94973
+
Phe
GAA
[ENA]
¡û
>W1610726781
LMFW01000001
Alphaproteobacteria
Mesorhizobium sp. Root1471 [LMFW]
3654197
3654122
-
Phe
GAA
[ENA]
¡û
>W1610726987
LMGA01000001
Alphaproteobacteria
Mesorhizobium sp. Root554 [LMGA]
3653450
3653375
-
Phe
GAA
[ENA]
¡û
>W1610773123
LNTU01000023
Alphaproteobacteria
Paramesorhizobium deserti [LNTU]
69697
69772
+
Phe
GAA
[ENA]
¡û
>W1611017650
LYPK01000011
Alphaproteobacteria
Rhizobium bangladeshense [LYPK]
78358
78433
+
Phe
GAA
[ENA]
¡û
>W1611017783
LYPN01000003
Alphaproteobacteria
Rhizobium bangladeshense [LYPN]
6695
6620
-
Phe
GAA
[ENA]
¡û
>W1710533645
FNRH01000001
Alphaproteobacteria
Pelagibacterium halotolerans H642 [FNRH]
344819
344894
+
Phe
GAA
[ENA]
¡û
>W1710574091
FOXZ01000017
Alphaproteobacteria
Nitratireductor indicus [FOXZ]
42107
42182
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK