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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456498 (19 seq.)
>W1711667334
MRDK01000038
Alphaproteobacteria
Rhizobium sophorae [MRDK]
136156
136081
-
Met
CAT
[ENA]
¡û
>PL171000988
CP014276
Alphaproteobacteria
Martelella sp. AD-3 plasmid:unnamed1
249223
249148
-
Met
CAT
[ENA]
¡û
>W131160102
AQWH01000043
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
18686
18761
+
Met
CAT
[ENA]
¡û
>C171105036
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
1875716
1875641
-
Met
CAT
-
¡û
>C171115041
CP021024
Alphaproteobacteria
Rhizobium sp. TAL182 [CP021024]
3184927
3185002
+
Met
CAT
-
¡û
>C171116084
CP021124
Alphaproteobacteria
Rhizobium sp. Kim5 [CP021124]
3155237
3155312
+
Met
CAT
-
¡û
>W141180678
AYGY02000130
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
9541
9616
+
Met
CAT
[ENA]
¡û
>W08010446
ABQY01002507
Alphaproteobacteria
Rhizobium etli Kim 5 [ABQY] Kim 5 [ABQY]
116
191
+
Met
CAT
[ENA]
¡û
>W141276524
JADW01000005
Alphaproteobacteria
Agrobacterium larrymoorei ATCC 51759 [JADW]
121515
121590
+
Met
CAT
[ENA]
¡û
>WENV170440206
CEUV01078456
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
136
211
+
Met
CAT
[ENA]
¢þ
>WENV170498770
CEVT01070644
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
245
320
+
Met
CAT
[ENA]
¢þ
>WENV170801120
MDSV01241258
[MDSV] marine metagenome; seawater
6421
6496
+
Met
CAT
[ENA]
¢þ
>WENV170900712
MDTD01158301
[MDTD] marine metagenome; seawater
7
82
+
Met
CAT
[ENA]
¢þ
>C191170897
CP039691
Alphaproteobacteria
Agrobacterium larrymoorei CFBP5473 [CP039691, CP039692]
1101556
1101631
+
Met
CAT
-
¡û
>W1911409354
NWSU01000043
Alphaproteobacteria
Rhizobium sp. S9 [NWSU]
10399
10324
-
Met
CAT
[ENA]
¡û
>W1810147374
PIQN01000008
Alphaproteobacteria
Rhizobium sullae HCNT1 [PIQN]
338441
338516
+
Met
CAT
[ENA]
¡û
>W1810365575
PVUG01000006
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
224413
224488
+
Met
CAT
[ENA]
¡û
>W1810394343
PYBP01000019
Alphaproteobacteria
Nitratireductor sp. StC3 [PYBP]
1417
1342
-
Met
CAT
[ENA]
¡û
>C151072549
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
1647727
1647652
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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