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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456513 (22 seq.)
>W131180052
ARMW01000006
Gammaproteobacteria
Oceanimonas smirnovii ATCC BAA-899 [ARMW]
147
72
-
Val
TAC
[ENA]
¡û
>C171118244
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
212505
212580
+
Val
TAC
-
¡û
>C171118245
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
212633
212708
+
Val
TAC
-
¡û
>C171118246
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
212761
212836
+
Val
TAC
-
¡û
>C171118248
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
212959
213034
+
Val
TAC
-
¡û
>C171118250
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
213157
213232
+
Val
TAC
-
¡û
>C171118252
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
213355
213430
+
Val
TAC
-
¡û
>C171118405
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
640285
640210
-
Val
TAC
-
¡û
>C171118406
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
640154
640079
-
Val
TAC
-
¡û
>C171118407
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
640023
639948
-
Val
TAC
-
¡û
>C171118409
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
639805
639730
-
Val
TAC
-
¡û
>C171118411
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
639588
639513
-
Val
TAC
-
¡û
>C171118413
CP021377
Gammaproteobacteria
Oceanisphaera profunda SM1222 [CP021377]
639371
639296
-
Val
TAC
-
¡û
>WENV170016238
AZIJ01017841
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
767
842
+
Val
TAC
[ENA]
¢þ
>W1910784563
MPZM01000018
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
52543
52468
-
Val
TAC
[ENA]
¡û
>W1810471833
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
92998
92923
-
Val
TAC
[ENA]
¡û
>W1810471836
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
92699
92624
-
Val
TAC
[ENA]
¡û
>W1810471839
QAGM01000004
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
92407
92332
-
Val
TAC
[ENA]
¡û
>W1810533034
QCZE01000001
Gammaproteobacteria
Zobellella maritima 102-Py4 [QCZE]
285409
285484
+
Val
TAC
[ENA]
¡û
>C121007355
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2713166
2713091
-
Val
TAC
[Ensembl]
¡û
>C121007358
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2712876
2712801
-
Val
TAC
[Ensembl]
¡û
>C121007361
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2712588
2712513
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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