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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456521 (133 seq.)
>W1710776031
LIZH01000641
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
77
2
-
Thr
TGT
[ENA]
¡û
>W1710776039
LIZH01000992
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
3591
3516
-
Thr
TGT
[ENA]
¡û
>W1710861107
LMDJ01000035
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
75375
75300
-
Thr
TGT
[ENA]
¡û
>W1710862070
LMEC01000022
Betaproteobacteria
Massilia sp. Root418 [LMEC]
581499
581574
+
Thr
TGT
[ENA]
¡û
>W1710871825
LMLM01000031
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
3450
3375
-
Thr
TGT
[ENA]
¡û
>W1710874778
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
83496
83571
+
Thr
TGT
[ENA]
¡û
>W1710890929
LNCE01000106
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
79179
79254
+
Thr
TGT
[ENA]
¡û
>W1710893483
LNEU01000026
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
439436
439361
-
Thr
TGT
[ENA]
¡û
>W1710924040
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
385667
385742
+
Thr
TGT
[ENA]
¡û
>W1711033356
LRHV01000022
Betaproteobacteria
Duganella sp. HH105 [LRHV]
75920
75845
-
Thr
TGT
[ENA]
¡û
>W1711033422
LRHW01000079
Betaproteobacteria
Janthinobacterium lividum [LRHW]
178626
178551
-
Thr
TGT
[ENA]
¡û
>W1711033457
LRHX01000007
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
224591
224516
-
Thr
TGT
[ENA]
¡û
>W1711033515
LRHY01000046
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
2580
2505
-
Thr
TGT
[ENA]
¡û
>W1711033617
LRHZ01000044
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
2651
2576
-
Thr
TGT
[ENA]
¡û
>W1711033669
LRIA01000111
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
2576
2501
-
Thr
TGT
[ENA]
¡û
>W1711033729
LRIB01000047
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
157470
157395
-
Thr
TGT
[ENA]
¡û
>W1711033763
LRIC01000019
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
156416
156341
-
Thr
TGT
[ENA]
¡û
>W1711033834
LRID01000097
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
62265
62340
+
Thr
TGT
[ENA]
¡û
>W1711046603
LROM01000050
Betaproteobacteria
Duganella phyllosphaerae [LROM]
85625
85700
+
Thr
TGT
[ENA]
¡û
>W1711046682
LRON01000014
Betaproteobacteria
Duganella sp. HH101 [LRON]
104229
104304
+
Thr
TGT
[ENA]
¡û
>W1711308567
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1616519
1616594
+
Thr
TGT
[ENA]
¡û
>W131050110
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
589672
589597
-
Thr
TGT
[ENA]
¡û
>W131106720
APFF01000033
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
371833
371908
+
Thr
TGT
[ENA]
¡û
>W131176156
ARJV01000010
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
20286
20211
-
Thr
TGT
[ENA]
¡û
>W131179101
ARMC01000024
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
13686
13611
-
Thr
TGT
[ENA]
¡û
>W1712004470
NEGX01000033
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
26556
26631
+
Thr
TGT
[ENA]
¡û
>W1712004542
NEGY01000018
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
26458
26533
+
Thr
TGT
[ENA]
¡û
>W1712004640
NEGZ01000060
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
5258
5183
-
Thr
TGT
[ENA]
¡û
>W1712004710
NEHA01000063
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
26459
26534
+
Thr
TGT
[ENA]
¡û
>W1712004793
NEHB01000020
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
26443
26518
+
Thr
TGT
[ENA]
¡û
>C171010495
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5894891
5894966
+
Thr
TGT
-
¡û
>C171095034
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
585063
584988
-
Thr
TGT
-
¡û
>C171130509
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2914629
2914704
+
Thr
TGT
-
¡û
>C010373
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3006126
3006051
-
Thr
TGT
[Ensembl]
¡û
>C011137
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3642192
3642117
-
Thr
TGT
[Ensembl]
¡û
>WENV180015857
FSTN01000012
[FSTN] metagenome; soil
79
154
+
Thr
TGT
[ENA]
¢þ
>WENV180016358
FSUS01000115
[FSUS] metagenome; soil
23
98
+
Thr
TGT
[ENA]
¢þ
>WENV180024837
FTIJ01108065
[FTIJ] metagenome; soil
274
199
-
Thr
TGT
[ENA]
¢þ
>WENV180024854
FTIJ01186130
[FTIJ] metagenome; soil
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV180025856
FTIQ01325552
[FTIQ] metagenome; soil
317
392
+
Thr
TGT
[ENA]
¢þ
>WENV180026443
FTIT01232673
[FTIT] metagenome; soil
865
790
-
Thr
TGT
[ENA]
¢þ
>WENV180027104
FTIW01016128
[FTIW] metagenome; soil
1
76
+
Thr
TGT
[ENA]
¢þ
>WENV180028931
FTJH01551406
[FTJH] metagenome; soil
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV180030931
FTJN01535133
[FTJN] metagenome; soil
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV180030948
FTJN01684519
[FTJN] metagenome; soil
76
1
-
Thr
TGT
[ENA]
¢þ
>WENV180033179
FTKF01015157
[FTKF] metagenome; soil
308
233
-
Thr
TGT
[ENA]
¢þ
>WENV183744370
PJUK01013239
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
16
91
+
Thr
TGT
[ENA]
¢þ
>WENV183745273
PJUL01013064
[PJUL] feces metagenome; Chicken feces enriched on filter paper
276
201
-
Thr
TGT
[ENA]
¢þ
>WENV170507563
CEVX01063971
[CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
360
285
-
Thr
TGT
[ENA]
¢þ
>WENV170558769
CXWL01089223
[CXWL] groundwater metagenome; biofilm material
47187
47262
+
Thr
TGT
[ENA]
¢þ
>WENV170559127
CXWL01111232
[CXWL] groundwater metagenome; biofilm material
7335
7260
-
Thr
TGT
[ENA]
¢þ
>WENV170559170
CXWL01112549
[CXWL] groundwater metagenome; biofilm material
4446
4371
-
Thr
TGT
[ENA]
¢þ
>WENV170559335
CXWL01119705
[CXWL] groundwater metagenome; biofilm material
3050
3125
+
Thr
TGT
[ENA]
¢þ
>WENV170559585
CXWL01131562
[CXWL] groundwater metagenome; biofilm material
2267
2342
+
Thr
TGT
[ENA]
¢þ
>WENV170708923
LNFM01000029
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
451242
451167
-
Thr
TGT
[ENA]
¢þ
>W141484458
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
363237
363162
-
Thr
TGT
[ENA]
¡û
>C181081172
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
606695
606620
-
Thr
TGT
-
¡û
>C181102719
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
695663
695588
-
Thr
TGT
-
¡û
>C191098137
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
6197274
6197199
-
Thr
TGT
-
¡û
>C191188174
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4468621
4468546
-
Thr
TGT
-
¡û
>W141821544
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4608915
4608840
-
Thr
TGT
[ENA]
¡û
>W1910942542
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
2813366
2813291
-
Thr
TGT
[ENA]
¡û
>W1911199892
NRDQ01000125
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
11009
10934
-
Thr
TGT
[ENA]
¡û
>W1911647606
QAJP01000005
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
127671
127746
+
Thr
TGT
[ENA]
¡û
>W1810062398
PDOB01000059
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
11835
11910
+
Thr
TGT
[ENA]
¡û
>W1810062405
PDOC01000001
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
546916
546841
-
Thr
TGT
[ENA]
¡û
>W1810068160
PDZI01000004
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
352765
352690
-
Thr
TGT
[ENA]
¡û
>W1810068280
PDZJ01000004
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
357610
357535
-
Thr
TGT
[ENA]
¡û
>W1810068357
PDZK01000004
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
89100
89175
+
Thr
TGT
[ENA]
¡û
>W1810068392
PDZL01000004
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
378664
378589
-
Thr
TGT
[ENA]
¡û
>W1810068485
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
185104
185029
-
Thr
TGT
[ENA]
¡û
>W1810068537
PDZN01000001
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
94952
95027
+
Thr
TGT
[ENA]
¡û
>W1810068673
PDZO02000019
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
33181
33106
-
Thr
TGT
[ENA]
¡û
>W1810068692
PDZP01000001
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
20436
20511
+
Thr
TGT
[ENA]
¡û
>W1810069780
PEBS01000053
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
2379
2304
-
Thr
TGT
[ENA]
¡û
>W1810071271
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2795967
2796042
+
Thr
TGT
[ENA]
¡û
>W1810072764
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2340233
2340308
+
Thr
TGT
[ENA]
¡û
>W1810089411
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4432518
4432443
-
Thr
TGT
[ENA]
¡û
>W1810121303
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
4037703
4037628
-
Thr
TGT
[ENA]
¡û
>W1810172823
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4671813
4671738
-
Thr
TGT
[ENA]
¡û
>W1810297203
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
545582
545657
+
Thr
TGT
[ENA]
¡û
>W1810387705
PXWF02000042
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
70933
70858
-
Thr
TGT
[ENA]
¡û
>W1810486585
QAXZ01000002
Betaproteobacteria
Massilia sp. GV045 [QAXZ]
645292
645367
+
Thr
TGT
[ENA]
¡û
>W1810487089
QAYI01000002
Betaproteobacteria
Massilia sp. GV016 [QAYI]
651328
651403
+
Thr
TGT
[ENA]
¡û
>W1810576831
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
625391
625316
-
Thr
TGT
[ENA]
¡û
>W1810672462
QJTL01000002
Betaproteobacteria
Duganella sp. GV083 [QJTL]
669213
669138
-
Thr
TGT
[ENA]
¡û
>W1810672576
QJTN01000002
Betaproteobacteria
Massilia sp. GV024 [QJTN]
651523
651598
+
Thr
TGT
[ENA]
¡û
>W1810677170
QKMN01000002
Betaproteobacteria
Duganella sp. GV053 [QKMN]
669213
669138
-
Thr
TGT
[ENA]
¡û
>W1810693406
QLLJ01000002
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
669213
669138
-
Thr
TGT
[ENA]
¡û
>W1810694368
QLLZ01000002
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
669213
669138
-
Thr
TGT
[ENA]
¡û
>W1810787961
QREC01000002
Betaproteobacteria
Duganella sp. GV023 [QREC]
541338
541413
+
Thr
TGT
[ENA]
¡û
>W1810885064
QUNB01000002
Betaproteobacteria
Duganella sp. GV032 [QUNB]
669603
669528
-
Thr
TGT
[ENA]
¡û
>W1810885183
QUND01000002
Betaproteobacteria
Duganella sp. GV046 [QUND]
669603
669528
-
Thr
TGT
[ENA]
¡û
>W1810885817
QUNP01000002
Betaproteobacteria
Duganella sp. GV038 [QUNP]
669603
669528
-
Thr
TGT
[ENA]
¡û
>W1810886074
QUNU01000003
Betaproteobacteria
Duganella sp. GV067 [QUNU]
148991
148916
-
Thr
TGT
[ENA]
¡û
>W1810908084
QVIL01000002
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
179014
179089
+
Thr
TGT
[ENA]
¡û
>W1810908151
QVIM01000002
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
164214
164289
+
Thr
TGT
[ENA]
¡û
>W1810908243
QVIN01000004
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
550043
549968
-
Thr
TGT
[ENA]
¡û
>W1810908346
QVIO01000013
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
12232
12157
-
Thr
TGT
[ENA]
¡û
>W1810908415
QVIP01000015
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
12233
12158
-
Thr
TGT
[ENA]
¡û
>C151100165
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
5458799
5458874
+
Thr
TGT
[Ensembl]
¡û
>W1511355695
JRRH01000025
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
82761
82836
+
Thr
TGT
[ENA]
¡û
>W1511588738
LBCO01000004
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
399725
399650
-
Thr
TGT
[ENA]
¡û
>WENV055505
AACY023229945
Marine microbial communities from Global Ocean Sampling (GOS)
404
481
+
Thr
TGT
[ENA]
>W121031795
AHHB01000014
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
53487
53412
-
Thr
TGT
[ENA]
¡û
>W1610070478
BCTH01000044
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
10463
10388
-
Thr
TGT
[ENA]
¡û
>W1610093150
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1079240
1079165
-
Thr
TGT
[ENA]
¡û
>W1610163444
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1079240
1079165
-
Thr
TGT
[ENA]
¡û
>W1610640137
LIZH01000641
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
77
2
-
Thr
TGT
[ENA]
¡û
>W1610640145
LIZH01000992
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
3591
3516
-
Thr
TGT
[ENA]
¡û
>W1610723453
LMDJ01000035
Betaproteobacteria
Massilia sp. Root351 [LMDJ]
75375
75300
-
Thr
TGT
[ENA]
¡û
>W1610724416
LMEC01000022
Betaproteobacteria
Massilia sp. Root418 [LMEC]
581499
581574
+
Thr
TGT
[ENA]
¡û
>W1610734171
LMLM01000031
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
3450
3375
-
Thr
TGT
[ENA]
¡û
>W1610737124
LMNW01000033
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
83496
83571
+
Thr
TGT
[ENA]
¡û
>W1610751325
LNCE01000106
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
79179
79254
+
Thr
TGT
[ENA]
¡û
>W1610753749
LNEU01000026
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
439436
439361
-
Thr
TGT
[ENA]
¡û
>W1610781686
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
385667
385742
+
Thr
TGT
[ENA]
¡û
>W1611056281
MAQB01000067
Betaproteobacteria
Janthinobacterium lividum [MAQB]
68110
68185
+
Thr
TGT
[ENA]
¡û
>W1710067851
BCTH01000044
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
10463
10388
-
Thr
TGT
[ENA]
¡û
>W1710096358
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1079240
1079165
-
Thr
TGT
[ENA]
¡û
>W1710165111
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1079240
1079165
-
Thr
TGT
[ENA]
¡û
>W1710509348
FMXD01000004
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
79660
79735
+
Thr
TGT
[ENA]
¡û
>W1710517040
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
452793
452868
+
Thr
TGT
[ENA]
¡û
>W1710522205
FNHA01000005
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
315100
315025
-
Thr
TGT
[ENA]
¡û
>W1710545166
FOBG01000003
Betaproteobacteria
Duganella sp. CF402 [FOBG]
490706
490781
+
Thr
TGT
[ENA]
¡û
>W1710547614
FODC01000008
Betaproteobacteria
Duganella sp. CF517 [FODC]
24665
24590
-
Thr
TGT
[ENA]
¡û
>W1710556748
FOKL01000006
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
79684
79759
+
Thr
TGT
[ENA]
¡û
>W1710568782
FOTW01000007
Betaproteobacteria
Rugamonas rubra [FOTW]
90681
90756
+
Thr
TGT
[ENA]
¡û
>W1710581724
FPKH01000006
Betaproteobacteria
Janthinobacterium lividum [FPKH]
84060
84135
+
Thr
TGT
[ENA]
¡û
>W1710586011
FQWU01000003
Betaproteobacteria
Massilia sp. CF038 [FQWU]
89838
89913
+
Thr
TGT
[ENA]
¡û
>W1710593041
FRCX01000012
Betaproteobacteria
Duganella sacchari [FRCX]
102878
102803
-
Thr
TGT
[ENA]
¡û
>W1710596839
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
354888
354813
-
Thr
TGT
[ENA]
¡û
>W1710720668
LFKP01000014
Betaproteobacteria
Janthinobacterium lividum [LFKP]
414017
414092
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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