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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456725 (57 seq.)
>W1711308704
MAQE01000002
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
69984
70059
+
His
GTG
[ENA]
¡û
>W1711308785
MAQF01000031
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
253
178
-
His
GTG
[ENA]
¡û
>W1711956701
NBTN01000001
Gammaproteobacteria
Aggregatibacter aphrophilus [NBTN]
1456388
1456313
-
His
GTG
[ENA]
¡û
>W131230218
AUHL01000004
Gammaproteobacteria
Pseudidiomarina sediminum DSM 21906 [AUHL]
78294
78369
+
His
GTG
[ENA]
¡û
>W141067271
ARZY01000126
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
157
232
+
His
GTG
[ENA]
¡û
>WENV180781458
ODIP01000120
[ODIP] human metagenome; G_DNA_Supragingival plaque
386
311
-
His
GTG
[ENA]
¢þ
>WENV180845757
ODKT01001942
[ODKT] human metagenome; G_DNA_Supragingival plaque
336
261
-
His
GTG
[ENA]
¢þ
>WENV180928376
ODTM01038485
[ODTM] human metagenome; G_DNA_Supragingival plaque
155
80
-
His
GTG
[ENA]
¢þ
>WENV180964118
ODUO01000292
[ODUO] human metagenome; G_DNA_Supragingival plaque
31692
31767
+
His
GTG
[ENA]
¢þ
>WENV180986683
ODVK01000383
[ODVK] human metagenome; G_DNA_Supragingival plaque
25216
25291
+
His
GTG
[ENA]
¢þ
>WENV181177829
OEJS01021042
[OEJS] human metagenome; G_DNA_Supragingival plaque
240
165
-
His
GTG
[ENA]
¢þ
>WENV181178774
OEJT01000244
[OEJT] human metagenome; G_DNA_Supragingival plaque
45124
45199
+
His
GTG
[ENA]
¢þ
>WENV181180639
OEJU01000430
[OEJU] human metagenome; G_DNA_Supragingival plaque
24829
24904
+
His
GTG
[ENA]
¢þ
>WENV170015983
AZIJ01006085
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
1001
1076
+
His
GTG
[ENA]
¢þ
>C181216662
LS483485
Gammaproteobacteria
Aggregatibacter aphrophilus NCTC11096 [LS483485]
1795805
1795730
-
His
GTG
-
¡û
>C191206883
LR134327
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 NCTC5906 [LR134327]
467816
467741
-
His
GTG
-
¡û
>C09100009
CP001607
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP001607]
591389
591464
+
His
GTG
[Ensembl]
¡û
>W1911198368
NRCK01000011
Gammaproteobacteria
Aggregatibacter kilianii PN_755 [NRCK]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198421
NRCL01000014
Gammaproteobacteria
Aggregatibacter kilianii PN_649 [NRCL]
25489
25564
+
His
GTG
[ENA]
¡û
>W1911198465
NRCM01000011
Gammaproteobacteria
Aggregatibacter kilianii PN_537 [NRCM]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198495
NRCN01000001
Gammaproteobacteria
Aggregatibacter kilianii PN_528 [NRCN]
1965501
1965576
+
His
GTG
[ENA]
¡û
>W1911198570
NRCO01000011
Gammaproteobacteria
Aggregatibacter kilianii PN_522 [NRCO]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198617
NRCP01000013
Gammaproteobacteria
Aggregatibacter kilianii PN_516 [NRCP]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198667
NRCQ01000010
Gammaproteobacteria
Aggregatibacter kilianii PN_452 [NRCQ]
63587
63662
+
His
GTG
[ENA]
¡û
>W1911198717
NRCR01000013
Gammaproteobacteria
Aggregatibacter kilianii Melo94 [NRCR]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198768
NRCS01000012
Gammaproteobacteria
Aggregatibacter kilianii Melo83 [NRCS]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911198816
NRCT01000013
Gammaproteobacteria
Aggregatibacter kilianii Melo68 [NRCT]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911199059
NRCY01000007
Gammaproteobacteria
Aggregatibacter aphrophilus PN_521 [NRCY]
98105
98180
+
His
GTG
[ENA]
¡û
>W1911199170
NRDA01000018
Gammaproteobacteria
Aggregatibacter aphrophilus PN_444 [NRDA]
26433
26508
+
His
GTG
[ENA]
¡û
>W1911199210
NRDB01000011
Gammaproteobacteria
Aggregatibacter aphrophilus HK_319 [NRDB]
70792
70867
+
His
GTG
[ENA]
¡û
>W1911199262
NRDC01000008
Gammaproteobacteria
Aggregatibacter aphrophilus CCUG 11575 [NRDC]
263
188
-
His
GTG
[ENA]
¡û
>W1911585256
PIPT01000005
Gammaproteobacteria
Pseudidiomarina aquimaris SW15 [PIPT]
155309
155384
+
His
GTG
[ENA]
¡û
>W1911585281
PIPU01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis 908033 [PIPU]
637580
637655
+
His
GTG
[ENA]
¡û
>W1911585450
PIPX01000001
Gammaproteobacteria
Pseudidiomarina homiensis PO-M2 [PIPX]
992178
992103
-
His
GTG
[ENA]
¡û
>W1911585545
PIPZ01000001
Gammaproteobacteria
Pseudidiomarina marina PIM1 [PIPZ]
981947
981872
-
His
GTG
[ENA]
¡û
>W1911585794
PIQE01000001
Gammaproteobacteria
Pseudidiomarina sediminum c121 [PIQE]
583515
583440
-
His
GTG
[ENA]
¡û
>W1911585974
PIQJ01000001
Gammaproteobacteria
Pseudidiomarina tainanensis PIN1 [PIQJ]
777813
777888
+
His
GTG
[ENA]
¡û
>W1911696684
QMGS01000043
Gammaproteobacteria
Aggregatibacter aphrophilus HK83 [QMGS]
609
534
-
His
GTG
[ENA]
¡û
>W1810578601
QEPU01000010
Gammaproteobacteria
Aggregatibacter aphrophilus C2008000870 [QEPU]
313
238
-
His
GTG
[ENA]
¡û
>W1810578654
QEPV01000013
Gammaproteobacteria
Aggregatibacter aphrophilus C2008001229 [QEPV]
38065
38140
+
His
GTG
[ENA]
¡û
>W1810578753
QEPX01000009
Gammaproteobacteria
Aggregatibacter aphrophilus C2008001782 [QEPX]
63870
63945
+
His
GTG
[ENA]
¡û
>W1810578802
QEPY01000008
Gammaproteobacteria
Aggregatibacter aphrophilus C2008003249 [QEPY]
66244
66319
+
His
GTG
[ENA]
¡û
>W1810578896
QEQA01000007
Gammaproteobacteria
Aggregatibacter aphrophilus C2009017515 [QEQA]
66244
66319
+
His
GTG
[ENA]
¡û
>W1810579012
QEQC01000010
Gammaproteobacteria
Aggregatibacter aphrophilus C2010020251 [QEQC]
70048
70123
+
His
GTG
[ENA]
¡û
>C151046071
CP009230
Gammaproteobacteria
Aggregatibacter aphrophilus NJ8700 [CP009230]
591381
591456
+
His
GTG
-
¡û
>C151090311
CP012067
Gammaproteobacteria
Aggregatibacter aphrophilus W10433 [CP012067]
1526397
1526472
+
His
GTG
-
¡û
>W11109771
ACZJ01000002
Gammaproteobacteria
Aggregatibacter aphrophilus F0387 [ACZJ]
65062
65137
+
His
GTG
[ENA]
¡û
>W1510741074
CYHB01000001
Gammaproteobacteria
Pseudidiomarina woesei DSM 27808 [CYHB]
648344
648269
-
His
GTG
[ENA]
¡û
>W1511586709
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
33947
33872
-
His
GTG
[ENA]
¡û
>W11150759
AEWB01000007
Gammaproteobacteria
Aggregatibacter aphrophilus ATCC 33389 [AEWB]
181
106
-
His
GTG
[ENA]
¡û
>W121070152
AJWM01000019
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
26719
26644
-
His
GTG
[ENA]
¡û
>W1610632467
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
648344
648269
-
His
GTG
[ENA]
¡û
>W1611056361
MAQE01000002
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQE]
69984
70059
+
His
GTG
[ENA]
¡û
>W1611056442
MAQF01000031
Gammaproteobacteria
Aggregatibacter aphrophilus [MAQF]
253
178
-
His
GTG
[ENA]
¡û
>W1710575012
FOYU01000001
Gammaproteobacteria
Pseudidiomarina maritima [FOYU]
965622
965547
-
His
GTG
[ENA]
¡û
>W1710579246
FPCF01000001
Gammaproteobacteria
Pseudidiomarina donghaiensis [FPCF]
636724
636799
+
His
GTG
[ENA]
¡û
>W1710766853
LIPW01000001
Gammaproteobacteria
Pseudidiomarina woesei [LIPW]
648344
648269
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK