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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456766 (67 seq.)
>W1711385765
MEEO01000116
Betaproteobacteria
Nitrosomonadales bacterium SCN 54-20 [MEEO]
11985
12060
+
Thr
CGT
[ENA]
¡û
>W1711505583
MKVR01000013
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
4865
4790
-
Thr
CGT
[ENA]
¡û
>C171089790
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
1688313
1688238
-
Thr
CGT
-
¡û
>W131249826
CAUA01000021
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
96954
97029
+
Thr
CGT
[ENA]
¡û
>C015159
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
3157579
3157654
+
Thr
CGT
[Ensembl]
¡û
>WENV180284917
OBID01159360
[OBID] metagenome; sludge
219
144
-
Thr
CGT
[ENA]
¢þ
>WENV181192631
OEPS010849584
[OEPS] soil metagenome; soil
107
32
-
Thr
CGT
[ENA]
¢þ
>WENV170554166
CXWK01051005
[CXWK] wastewater metagenome; activated sludge
2494
2569
+
Thr
CGT
[ENA]
¢þ
>WENV170556852
CXWL01015024
[CXWL] groundwater metagenome; biofilm material
11699
11624
-
Thr
CGT
[ENA]
¢þ
>WENV170557747
CXWL01036100
[CXWL] groundwater metagenome; biofilm material
695
770
+
Thr
CGT
[ENA]
¢þ
>WENV170557798
CXWL01038171
[CXWL] groundwater metagenome; biofilm material
696
771
+
Thr
CGT
[ENA]
¢þ
>WENV170577099
FRDC01003191
[FRDC] freshwater metagenome; water
2781
2856
+
Thr
CGT
[ENA]
¢þ
>C181049327
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
592348
592273
-
Thr
CGT
-
¡û
>W09133571
ACPG01000015
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
1456
1381
-
Thr
CGT
[ENA]
¡û
>W141558444
JHVX01000011
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
107703
107778
+
Thr
CGT
[ENA]
¡û
>W1910228555
FNVK01000009
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
7109
7034
-
Thr
CGT
[ENA]
¡û
>W1911496584
OCMU01000001
Betaproteobacteria
Nitrosomonas ureae Nm42 [OCMU]
1304208
1304283
+
Thr
CGT
[ENA]
¡û
>W1911496906
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
598686
598611
-
Thr
CGT
[ENA]
¡û
>W1810389535
PXXU01000007
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
52127
52202
+
Thr
CGT
[ENA]
¡û
>W1810463611
PZZR01000009
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
109737
109812
+
Thr
CGT
[ENA]
¡û
>W1810463658
PZZS01000031
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
7295
7220
-
Thr
CGT
[ENA]
¡û
>W1810463677
PZZT01000007
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
50428
50353
-
Thr
CGT
[ENA]
¡û
>W1810464091
QAAC01000010
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
104318
104393
+
Thr
CGT
[ENA]
¡û
>W1810476855
QAOI01000014
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
65097
65172
+
Thr
CGT
[ENA]
¡û
>W1810476964
QAOK01000035
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
189
114
-
Thr
CGT
[ENA]
¡û
>W1810477108
QAOO01000003
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
174065
174140
+
Thr
CGT
[ENA]
¡û
>W1810477278
QAOR01000010
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
104318
104393
+
Thr
CGT
[ENA]
¡û
>W1810477432
QAOU01000007
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
107184
107259
+
Thr
CGT
[ENA]
¡û
>W1810503430
QBKC01000008
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
9940
9865
-
Thr
CGT
[ENA]
¡û
>W1810658849
QJJP01000032
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
20793
20718
-
Thr
CGT
[ENA]
¡û
>W1810659212
QJJW01000041
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
10136
10211
+
Thr
CGT
[ENA]
¡û
>W1810696189
QLTB01000011
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
8201
8126
-
Thr
CGT
[ENA]
¡û
>W1810696237
QLTC01000019
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
3575
3500
-
Thr
CGT
[ENA]
¡û
>W1810696289
QLTD01000016
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
8453
8378
-
Thr
CGT
[ENA]
¡û
>C151082883
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
1113430
1113355
-
Thr
CGT
[Ensembl]
¡û
>C151094466
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
1779945
1779870
-
Thr
CGT
-
¡û
>C11115651
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
245221
245146
-
Thr
CGT
[Ensembl]
¡û
>W1511508776
JXQM01000014
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
10427
10352
-
Thr
CGT
[ENA]
¡û
>W1710505985
FMUF01000029
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
30449
30524
+
Thr
CGT
[ENA]
¡û
>W1710507302
FMVD01000012
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
5615
5540
-
Thr
CGT
[ENA]
¡û
>W1710507951
FMVQ01000012
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
93873
93948
+
Thr
CGT
[ENA]
¡û
>W1710509144
FMWY01000008
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
13900
13825
-
Thr
CGT
[ENA]
¡û
>W1710517416
FNDH01000041
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
10935
10860
-
Thr
CGT
[ENA]
¡û
>W1710527360
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
573713
573638
-
Thr
CGT
[ENA]
¡û
>W1710528547
FNNH01000035
Betaproteobacteria
Nitrosomonas communis [FNNH]
2513
2438
-
Thr
CGT
[ENA]
¡û
>W1710529715
FNOE01000017
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
8398
8323
-
Thr
CGT
[ENA]
¡û
>W1710531198
FNPJ01000047
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
22582
22657
+
Thr
CGT
[ENA]
¡û
>W1710531567
FNPQ01000004
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
83147
83222
+
Thr
CGT
[ENA]
¡û
>W1710532607
FNQL01000010
Betaproteobacteria
Nitrosospira multiformis [FNQL]
5381
5306
-
Thr
CGT
[ENA]
¡û
>W1710538909
FNUX01000012
Betaproteobacteria
Nitrosomonas ureae [FNUX]
40395
40320
-
Thr
CGT
[ENA]
¡û
>W1710545190
FOBH01000004
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
105293
105368
+
Thr
CGT
[ENA]
¡û
>W1710547000
FOCP01000009
Betaproteobacteria
Nitrosomonas marina [FOCP]
1481
1406
-
Thr
CGT
[ENA]
¡û
>W1710547241
FOCT01000011
Betaproteobacteria
Nitrosospira multiformis [FOCT]
101007
101082
+
Thr
CGT
[ENA]
¡û
>W1710548189
FODO01000007
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
8399
8324
-
Thr
CGT
[ENA]
¡û
>W1710548603
FODX01000008
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
4381
4306
-
Thr
CGT
[ENA]
¡û
>W1710551239
FOFX01000093
Betaproteobacteria
Nitrosomonas ureae [FOFX]
4737
4812
+
Thr
CGT
[ENA]
¡û
>W1710553130
FOHI01000008
Betaproteobacteria
Nitrosospira multiformis [FOHI]
99864
99939
+
Thr
CGT
[ENA]
¡û
>W1710553929
FOIA01000008
Betaproteobacteria
Nitrosomonas marina [FOIA]
366
291
-
Thr
CGT
[ENA]
¡û
>W1710560178
FONE01000030
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
27744
27819
+
Thr
CGT
[ENA]
¡û
>W1710563636
FOPV01000009
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
113815
113890
+
Thr
CGT
[ENA]
¡û
>W1710565308
FORD01000026
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
37019
36944
-
Thr
CGT
[ENA]
¡û
>W1710569045
FOUB01000025
Betaproteobacteria
Nitrosomonas communis [FOUB]
39050
38975
-
Thr
CGT
[ENA]
¡û
>W1710569210
FOUF01000007
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
6435
6360
-
Thr
CGT
[ENA]
¡û
>W1710570796
FOVJ01000008
Betaproteobacteria
Nitrosospira briensis [FOVJ]
3394
3319
-
Thr
CGT
[ENA]
¡û
>W1710571490
FOVY01000011
Betaproteobacteria
Nitrosospira briensis [FOVY]
4618
4543
-
Thr
CGT
[ENA]
¡û
>W1710578975
FPBZ01000010
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
14530
14455
-
Thr
CGT
[ENA]
¡û
>W1710591607
FRBV01000009
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
108267
108342
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK