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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456878 (102 seq.)
>W1711750479
MUMZ01000104
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
60066
60141
+
Glu
TTC
[ENA]
¡û
>W1711750480
MUMZ01000105
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
65771
65846
+
Glu
TTC
[ENA]
¡û
>C171092333
CP019326
Gammaproteobacteria
Halomonas sp. 1513 [CP019326]
3136931
3136856
-
Glu
TTC
-
¡û
>W131196518
ASTJ01000024
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
84509
84434
-
Glu
TTC
[ENA]
¡û
>W131196520
ASTJ01000024
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
84235
84160
-
Glu
TTC
[ENA]
¡û
>W131196522
ASTJ01000024
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
83940
83865
-
Glu
TTC
[ENA]
¡û
>W131220988
AUAB01000002
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
376033
376108
+
Glu
TTC
[ENA]
¡û
>W131220992
AUAB01000002
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
376602
376677
+
Glu
TTC
[ENA]
¡û
>W141093337
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
914974
915049
+
Glu
TTC
[ENA]
¡û
>W141093338
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1018365
1018440
+
Glu
TTC
[ENA]
¡û
>W141093340
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1018577
1018652
+
Glu
TTC
[ENA]
¡û
>W141093342
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1018789
1018864
+
Glu
TTC
[ENA]
¡û
>W141093344
AVBC01000039
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [AVBC]
1019098
1019173
+
Glu
TTC
[ENA]
¡û
>W141152721
AXCA01000090
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
3933
4008
+
Glu
TTC
[ENA]
¡û
>W141152723
AXCA01000090
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
4130
4205
+
Glu
TTC
[ENA]
¡û
>W141152725
AXCA01000090
Gammaproteobacteria
Halomonas sp. PBN3 [AXCA]
4411
4486
+
Glu
TTC
[ENA]
¡û
>W141212688
AZQX01000223
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
9695
9620
-
Glu
TTC
[ENA]
¡û
>W141212707
AZQX01000359
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
10273
10348
+
Glu
TTC
[ENA]
¡û
>W141212710
AZQX01000369
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
4833
4908
+
Glu
TTC
[ENA]
¡û
>W141212712
AZQX01000369
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
5111
5186
+
Glu
TTC
[ENA]
¡û
>WENV170337635
CETA01141711
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
354
429
+
Glu
TTC
[ENA]
¢þ
>WENV170680041
LFCJ01002899
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
12161
12236
+
Glu
TTC
[ENA]
¢þ
>WENV170680043
LFCJ01002899
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
12362
12437
+
Glu
TTC
[ENA]
¢þ
>WENV170965466
MTEU01002934
[MTEU] soil metagenome; naturally attenuated soil
62561
62636
+
Glu
TTC
[ENA]
¢þ
>WENV170965484
MTEU01003094
[MTEU] soil metagenome; naturally attenuated soil
30054
30129
+
Glu
TTC
[ENA]
¢þ
>WENV170965486
MTEU01003094
[MTEU] soil metagenome; naturally attenuated soil
30301
30376
+
Glu
TTC
[ENA]
¢þ
>WENV170965687
MTEV01000129
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
62480
62555
+
Glu
TTC
[ENA]
¢þ
>WENV170965771
MTEV01002753
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
333
258
-
Glu
TTC
[ENA]
¢þ
>WENV170965773
MTEV01002753
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
86
11
-
Glu
TTC
[ENA]
¢þ
>WENV170966106
MTEX01001593
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
62480
62555
+
Glu
TTC
[ENA]
¢þ
>WENV170966299
MTEX01006381
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
120100
120025
-
Glu
TTC
[ENA]
¢þ
>WENV170966301
MTEX01006381
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
119853
119778
-
Glu
TTC
[ENA]
¢þ
>C181088229
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
2551223
2551298
+
Glu
TTC
-
¡û
>C181088233
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
2551625
2551700
+
Glu
TTC
-
¡û
>W1810062638
PDOG01000003
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
130109
130184
+
Glu
TTC
[ENA]
¡û
>W1810062639
PDOG01000003
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
233789
233864
+
Glu
TTC
[ENA]
¡û
>W1810062641
PDOG01000003
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
233968
234043
+
Glu
TTC
[ENA]
¡û
>W1810062727
PDOH01000049
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
165115
165190
+
Glu
TTC
[ENA]
¡û
>W1810062728
PDOH01000049
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
278810
278885
+
Glu
TTC
[ENA]
¡û
>W1810144784
PINZ01000008
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
34686
34761
+
Glu
TTC
[ENA]
¡û
>W1810144806
PINZ01000038
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
5
80
+
Glu
TTC
[ENA]
¡û
>W1810144808
PINZ01000038
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
197
272
+
Glu
TTC
[ENA]
¡û
>W1810144820
PINZ01000165
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
2
77
+
Glu
TTC
[ENA]
¡û
>W1810177423
PJRN01000003
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
236172
236097
-
Glu
TTC
[ENA]
¡û
>W1810177424
PJRN01000003
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
126363
126288
-
Glu
TTC
[ENA]
¡û
>W1810199955
PNRE01000038
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
139
64
-
Glu
TTC
[ENA]
¡û
>W1810199976
PNRE01000100
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
165115
165190
+
Glu
TTC
[ENA]
¡û
>W1810200018
PNRF01000019
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
218
143
-
Glu
TTC
[ENA]
¡û
>W1810385354
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
1011077
1011152
+
Glu
TTC
[ENA]
¡û
>W1810385356
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
1011272
1011347
+
Glu
TTC
[ENA]
¡û
>W1810385399
PXNS01000010
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
48679
48754
+
Glu
TTC
[ENA]
¡û
>W1810385414
PXNT01000001
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
141462
141387
-
Glu
TTC
[ENA]
¡û
>W1810385416
PXNT01000001
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
141267
141192
-
Glu
TTC
[ENA]
¡û
>W1810385420
PXNT01000001
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
140878
140803
-
Glu
TTC
[ENA]
¡û
>W1810385457
PXNT01000016
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
68368
68293
-
Glu
TTC
[ENA]
¡û
>W1810425985
PYVV01000008
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
36296
36371
+
Glu
TTC
[ENA]
¡û
>W1810425997
PYVV01000013
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
21980
21905
-
Glu
TTC
[ENA]
¡û
>W1810425999
PYVV01000013
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
21785
21710
-
Glu
TTC
[ENA]
¡û
>W1810426001
PYVV01000013
Gammaproteobacteria
Halomonas sp. BN3-1 [PYVV]
21604
21529
-
Glu
TTC
[ENA]
¡û
>W1810608683
QGTM01000043
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
2435
2510
+
Glu
TTC
[ENA]
¡û
>W1810608685
QGTM01000043
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
2620
2695
+
Glu
TTC
[ENA]
¡û
>W1810624114
QHGY01000001
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
1115809
1115734
-
Glu
TTC
[ENA]
¡û
>W1810624115
QHGY01000001
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
1016569
1016494
-
Glu
TTC
[ENA]
¡û
>W1810624117
QHGY01000001
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
1016331
1016256
-
Glu
TTC
[ENA]
¡û
>W1810758229
QPII01000005
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
108215
108290
+
Glu
TTC
[ENA]
¡û
>W1810758230
QPII01000005
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
216537
216612
+
Glu
TTC
[ENA]
¡û
>W1810758232
QPII01000005
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
216814
216889
+
Glu
TTC
[ENA]
¡û
>W1810760651
QPKI01000005
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
48501
48426
-
Glu
TTC
[ENA]
¡û
>W1810760668
QPKI01000011
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
22451
22526
+
Glu
TTC
[ENA]
¡û
>W1810760670
QPKI01000011
Gammaproteobacteria
Halomonas sp. DQ26W [QPKI]
22659
22734
+
Glu
TTC
[ENA]
¡û
>W1511398563
JTDR01000003
Gammaproteobacteria
Halomonas hydrothermalis MTCC 5445 [JTDR]
405
330
-
Glu
TTC
[ENA]
¡û
>W1511398587
JTDR01000010
Gammaproteobacteria
Halomonas hydrothermalis MTCC 5445 [JTDR]
126377
126302
-
Glu
TTC
[ENA]
¡û
>W1511518467
JXYB01000044
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
136993
136918
-
Glu
TTC
[ENA]
¡û
>W1511518491
JXYB01000117
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
211
136
-
Glu
TTC
[ENA]
¡û
>C161051015
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1257105
1257180
+
Glu
TTC
-
¡û
>C161051016
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1360496
1360571
+
Glu
TTC
-
¡û
>C161051018
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1360708
1360783
+
Glu
TTC
-
¡û
>C161051020
CP013106
Gammaproteobacteria
Halomonas huangheensis BJGMM-B45 [CP013106]
1361017
1361092
+
Glu
TTC
-
¡û
>C161068838
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
3260046
3260121
+
Glu
TTC
[Ensembl]
¡û
>C161068849
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
2818610
2818535
-
Glu
TTC
[Ensembl]
¡û
>C161068851
CP014226
Gammaproteobacteria
Halomonas chromatireducens AGD 8-3 [CP014226]
2818333
2818258
-
Glu
TTC
[Ensembl]
¡û
>W121067813
AJTS01000031
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
31493
31418
-
Glu
TTC
[ENA]
¡û
>W121067815
AJTS01000031
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
31283
31208
-
Glu
TTC
[ENA]
¡û
>W121067817
AJTS01000031
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
31091
31016
-
Glu
TTC
[ENA]
¡û
>W121067824
AJTS01000034
Gammaproteobacteria
Halomonas stevensii S18214 [AJTS]
17711
17636
-
Glu
TTC
[ENA]
¡û
>W121123941
BAEU01000098
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
2100
2175
+
Glu
TTC
[ENA]
¡û
>W121123942
BAEU01000106
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
28205
28280
+
Glu
TTC
[ENA]
¡û
>W121123944
BAEU01000106
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
28517
28592
+
Glu
TTC
[ENA]
¡û
>W1710524594
FNIV01000014
Gammaproteobacteria
Halomonas shengliensis [FNIV]
46908
46833
-
Glu
TTC
[ENA]
¡û
>W1710539160
FNVC01000015
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
39174
39099
-
Glu
TTC
[ENA]
¡û
>W1710539162
FNVC01000015
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
38927
38852
-
Glu
TTC
[ENA]
¡û
>W1710539168
FNVC01000017
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
62426
62501
+
Glu
TTC
[ENA]
¡û
>W1710591833
FRCA01000001
Gammaproteobacteria
Halomonas cupida [FRCA]
60230
60305
+
Glu
TTC
[ENA]
¡û
>W1710591882
FRCA01000017
Gammaproteobacteria
Halomonas cupida [FRCA]
47608
47533
-
Glu
TTC
[ENA]
¡û
>W1710719184
LFGS01000019
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
555466
555541
+
Glu
TTC
[ENA]
¡û
>W1710719185
LFGS01000019
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
635118
635193
+
Glu
TTC
[ENA]
¡û
>W1710719187
LFGS01000019
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
635328
635403
+
Glu
TTC
[ENA]
¡û
>W1710719189
LFGS01000019
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
635521
635596
+
Glu
TTC
[ENA]
¡û
>W1710719230
LFGT01000012
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
35319
35394
+
Glu
TTC
[ENA]
¡û
>W1710719231
LFGT01000012
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
116672
116747
+
Glu
TTC
[ENA]
¡û
>W1710719233
LFGT01000012
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
116882
116957
+
Glu
TTC
[ENA]
¡û
>W1710719235
LFGT01000012
Gammaproteobacteria
Halomonas sp. BC2 [LFGT]
117074
117149
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK