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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456895 (76 seq.)
>W1711314241
MAUH01000005
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
111470
111395
-
Met
CAT
[ENA]
¡û
>W1711314243
MAUH01000005
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
111249
111174
-
Met
CAT
[ENA]
¡û
>W1711385036
MEDR01000026
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
132214
132289
+
Met
CAT
[ENA]
¡û
>W131170820
ARFT01000012
Bacteroidota
Riemerella columbina DSM 16469 [ARFT]
46380
46305
-
Met
CAT
[ENA]
¡û
>W1711503221
MKTK01000006
Bacteroidota
Chryseobacterium sp. 39-10 [MKTK]
12897
12822
-
Met
CAT
[ENA]
¡û
>W1712082014
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
7329
7254
-
Met
CAT
[ENA]
¡û
>W1712082015
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
6957
6882
-
Met
CAT
[ENA]
¡û
>W141291537
JASZ01000216
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
6520
6595
+
Met
CAT
[ENA]
¡û
>WENV170009897
APMI01004625
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
774
699
-
Met
CAT
[ENA]
¢þ
>C181074476
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
675951
675878
-
Met
CAT
-
¡û
>C181074478
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
675730
675657
-
Met
CAT
-
¡û
>C181225806
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2749768
2749841
+
Met
CAT
-
¡û
>C181225807
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2749896
2749969
+
Met
CAT
-
¡û
>C191025430
CP023540
Bacteroidota
Chryseobacterium sp. 6424 [CP023540]
1363015
1362942
-
Met
CAT
-
¡û
>C191116051
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
83093
83166
+
Met
CAT
-
¡û
>C191116053
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
83316
83391
+
Met
CAT
-
¡û
>C191116164
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
2926218
2926143
-
Met
CAT
-
¡û
>C191116473
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
2314811
2314738
-
Met
CAT
-
¡û
>C191116503
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
1316717
1316790
+
Met
CAT
-
¡û
>C191116505
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
1316941
1317014
+
Met
CAT
-
¡û
>C191116507
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
1317165
1317240
+
Met
CAT
-
¡û
>C191120425
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
2286229
2286302
+
Met
CAT
-
¡û
>C191120919
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1581814
1581741
-
Met
CAT
-
¡û
>C191120920
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1581686
1581613
-
Met
CAT
-
¡û
>C191120935
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1219422
1219495
+
Met
CAT
-
¡û
>C191120936
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1219550
1219623
+
Met
CAT
-
¡û
>C191219170
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
951856
951783
-
Met
CAT
-
¡û
>C191219172
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
951632
951557
-
Met
CAT
-
¡û
>W141809588
JPRP01000001
Bacteroidota
Chryseobacterium formosense [JPRP]
2013106
2013181
+
Met
CAT
[ENA]
¡û
>W141809590
JPRP01000001
Bacteroidota
Chryseobacterium formosense [JPRP]
2013327
2013402
+
Met
CAT
[ENA]
¡û
>W1910933666
NIUY01000002
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
417360
417433
+
Met
CAT
[ENA]
¡û
>C09106214
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
1274486
1274561
+
Met
CAT
[Ensembl]
¡û
>C09106215
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
1275112
1275187
+
Met
CAT
[Ensembl]
¡û
>W1911701761
QNVS01000130
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
1314
1387
+
Met
CAT
[ENA]
¡û
>W1911701763
QNVS01000130
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
1538
1611
+
Met
CAT
[ENA]
¡û
>W1911701765
QNVS01000130
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
1762
1837
+
Met
CAT
[ENA]
¡û
>W1911702005
QNVW01000005
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
17569
17642
+
Met
CAT
[ENA]
¡û
>W1911702007
QNVW01000005
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
17793
17868
+
Met
CAT
[ENA]
¡û
>W1810193900
PKNN01000032
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
51448
51523
+
Met
CAT
[ENA]
¡û
>W1810758171
QPIE01000007
Bacteroidota
Chryseobacterium lacus YLOS41 [QPIE]
131047
131120
+
Met
CAT
[ENA]
¡û
>W1511685300
LFNG01000007
Bacteroidota
Chryseobacterium koreense CCUG 49689 [LFNG]
30666
30591
-
Met
CAT
[ENA]
¡û
>W1610095115
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
1228363
1228288
-
Met
CAT
[ENA]
¡û
>W1610596831
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
77251
77326
+
Met
CAT
[ENA]
¡û
>W1610596833
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
77469
77544
+
Met
CAT
[ENA]
¡û
>W1610596835
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
77691
77766
+
Met
CAT
[ENA]
¡û
>W1610596836
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
135561
135636
+
Met
CAT
[ENA]
¡û
>W1610597220
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
67243
67168
-
Met
CAT
[ENA]
¡û
>W1610597222
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
67025
66950
-
Met
CAT
[ENA]
¡û
>W1610597224
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
66803
66728
-
Met
CAT
[ENA]
¡û
>W1610597225
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
8933
8858
-
Met
CAT
[ENA]
¡û
>W1611059116
MAUH01000005
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
111470
111395
-
Met
CAT
[ENA]
¡û
>W1611059118
MAUH01000005
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
111249
111174
-
Met
CAT
[ENA]
¡û
>W1710097910
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
1228363
1228288
-
Met
CAT
[ENA]
¡û
>W1710514169
FNAS01000014
Bacteroidota
Riemerella columbipharyngis [FNAS]
184
259
+
Met
CAT
[ENA]
¡û
>W1710522369
FNHD01000005
Bacteroidota
Chryseobacterium taihuense [FNHD]
4896
4821
-
Met
CAT
[ENA]
¡û
>W1710522371
FNHD01000005
Bacteroidota
Chryseobacterium taihuense [FNHD]
4672
4597
-
Met
CAT
[ENA]
¡û
>W1710538646
FNUS01000001
Bacteroidota
Halpernia humi [FNUS]
572533
572458
-
Met
CAT
[ENA]
¡û
>W1710564813
FOQT01000001
Bacteroidota
Halpernia frigidisoli [FOQT]
608251
608326
+
Met
CAT
[ENA]
¡û
>W1710577099
FPAP01000001
Bacteroidota
Chryseobacterium formosense [FPAP]
633364
633439
+
Met
CAT
[ENA]
¡û
>W1710577101
FPAP01000001
Bacteroidota
Chryseobacterium formosense [FPAP]
633585
633660
+
Met
CAT
[ENA]
¡û
>W1710587264
FQYI01000005
Bacteroidota
Cruoricaptor ignavus [FQYI]
147742
147817
+
Met
CAT
[ENA]
¡û
>W1710594980
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
1063395
1063320
-
Met
CAT
[ENA]
¡û
>W1710594982
FSRQ01000001
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
1063171
1063096
-
Met
CAT
[ENA]
¡û
>W1710595874
FTMF01000004
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
235507
235582
+
Met
CAT
[ENA]
¡û
>W1710595876
FTMF01000004
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
235730
235805
+
Met
CAT
[ENA]
¡û
>W1710603602
FUZE01000028
Bacteroidota
Chryseobacterium balustinum [FUZE]
23446
23521
+
Met
CAT
[ENA]
¡û
>W1710603604
FUZE01000028
Bacteroidota
Chryseobacterium balustinum [FUZE]
23670
23745
+
Met
CAT
[ENA]
¡û
>W1710603606
FUZE01000028
Bacteroidota
Chryseobacterium balustinum [FUZE]
23894
23969
+
Met
CAT
[ENA]
¡û
>W1710717836
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
77251
77326
+
Met
CAT
[ENA]
¡û
>W1710717838
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
77469
77544
+
Met
CAT
[ENA]
¡û
>W1710717840
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
77691
77766
+
Met
CAT
[ENA]
¡û
>W1710717841
LELA01000055
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
135561
135636
+
Met
CAT
[ENA]
¡û
>W1710718544
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
67243
67168
-
Met
CAT
[ENA]
¡û
>W1710718546
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
67025
66950
-
Met
CAT
[ENA]
¡û
>W1710718548
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
66803
66728
-
Met
CAT
[ENA]
¡û
>W1710718549
LFEG01000086
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
8933
8858
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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