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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457045 (129 seq.)
>W1711117560
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
495941
495866
-
Lys
TTT
[ENA]
¡û
>W1711117562
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
495738
495663
-
Lys
TTT
[ENA]
¡û
>W1711117591
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
291037
291112
+
Lys
TTT
[ENA]
¡û
>W1711117593
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
291240
291315
+
Lys
TTT
[ENA]
¡û
>W1711117628
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
850453
850378
-
Lys
TTT
[ENA]
¡û
>W1711117630
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
850254
850179
-
Lys
TTT
[ENA]
¡û
>W1711117665
LUDJ01000002
Bacteroidota
Riemerella anatipestifer [LUDJ]
11343
11418
+
Lys
TTT
[ENA]
¡û
>W1711117667
LUDJ01000002
Bacteroidota
Riemerella anatipestifer [LUDJ]
11546
11621
+
Lys
TTT
[ENA]
¡û
>W1711117705
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
499703
499628
-
Lys
TTT
[ENA]
¡û
>W1711117707
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
499500
499425
-
Lys
TTT
[ENA]
¡û
>W1711117735
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
121494
121569
+
Lys
TTT
[ENA]
¡û
>W1711117737
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
121697
121772
+
Lys
TTT
[ENA]
¡û
>W1711117794
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
121372
121447
+
Lys
TTT
[ENA]
¡û
>W1711117796
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
121575
121650
+
Lys
TTT
[ENA]
¡û
>W1711117830
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
121372
121447
+
Lys
TTT
[ENA]
¡û
>W1711117832
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
121575
121650
+
Lys
TTT
[ENA]
¡û
>W1711117859
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
321441
321366
-
Lys
TTT
[ENA]
¡û
>W1711117861
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
321238
321163
-
Lys
TTT
[ENA]
¡û
>W1711117890
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
121471
121546
+
Lys
TTT
[ENA]
¡û
>W1711117892
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
121674
121749
+
Lys
TTT
[ENA]
¡û
>W1711117931
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
321440
321365
-
Lys
TTT
[ENA]
¡û
>W1711117933
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
321237
321162
-
Lys
TTT
[ENA]
¡û
>W1711117973
LUDR01000008
Bacteroidota
Riemerella anatipestifer [LUDR]
99773
99698
-
Lys
TTT
[ENA]
¡û
>W1711117975
LUDR01000008
Bacteroidota
Riemerella anatipestifer [LUDR]
99574
99499
-
Lys
TTT
[ENA]
¡û
>W1711118003
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
496010
495935
-
Lys
TTT
[ENA]
¡û
>W1711118005
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
495807
495732
-
Lys
TTT
[ENA]
¡û
>W1711118044
LUDT01000019
Bacteroidota
Riemerella anatipestifer [LUDT]
32857
32932
+
Lys
TTT
[ENA]
¡û
>W1711118046
LUDT01000019
Bacteroidota
Riemerella anatipestifer [LUDT]
33057
33132
+
Lys
TTT
[ENA]
¡û
>W1711118075
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
324404
324329
-
Lys
TTT
[ENA]
¡û
>W1711118077
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
324201
324126
-
Lys
TTT
[ENA]
¡û
>W1711118106
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
177077
177152
+
Lys
TTT
[ENA]
¡û
>W1711118108
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
177280
177355
+
Lys
TTT
[ENA]
¡û
>C171015080
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
266525
266450
-
Lys
TTT
-
¡û
>C171015082
CP011859
Bacteroidota
Riemerella anatipestifer HXb2 [CP011859]
266322
266247
-
Lys
TTT
-
¡û
>W131059198
ANGF01000002
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
85492
85567
+
Lys
TTT
[ENA]
¡û
>W131059200
ANGF01000002
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
85695
85770
+
Lys
TTT
[ENA]
¡û
>WENV180007781
FLSB01000001
[FLSB] metagenome; saliva
229065
229138
+
Lys
TTT
[ENA]
¢þ
>WENV180007783
FLSB01000001
[FLSB] metagenome; saliva
229246
229319
+
Lys
TTT
[ENA]
¢þ
>WENV180007784
FLSB01000001
[FLSB] metagenome; saliva
229402
229475
+
Lys
TTT
[ENA]
¢þ
>WENV180007786
FLSB01000001
[FLSB] metagenome; saliva
229583
229656
+
Lys
TTT
[ENA]
¢þ
>W141007801
AGYA01000037
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
50763
50688
-
Lys
TTT
[ENA]
¡û
>W141007803
AGYA01000037
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
50588
50513
-
Lys
TTT
[ENA]
¡û
>W141007825
AGYB01000007
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
25089
25164
+
Lys
TTT
[ENA]
¡û
>W141007827
AGYB01000007
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
25272
25347
+
Lys
TTT
[ENA]
¡û
>WENV180758907
ODHY01000002
[ODHY] human metagenome; G_DNA_Buccal mucosa
227118
227191
+
Lys
TTT
[ENA]
¢þ
>WENV180758909
ODHY01000002
[ODHY] human metagenome; G_DNA_Buccal mucosa
227299
227372
+
Lys
TTT
[ENA]
¢þ
>WENV180794039
ODIY01000411
[ODIY] human metagenome; G_DNA_Buccal mucosa
2869
2942
+
Lys
TTT
[ENA]
¢þ
>WENV180862656
ODLF01000995
[ODLF] human metagenome; G_DNA_Buccal mucosa
94
21
-
Lys
TTT
[ENA]
¢þ
>WENV180864794
ODLI01000016
[ODLI] human metagenome; G_DNA_Buccal mucosa
3414
3341
-
Lys
TTT
[ENA]
¢þ
>WENV180881095
ODLZ01154757
[ODLZ] human metagenome; G_DNA_Tongue dorsum
236
163
-
Lys
TTT
[ENA]
¢þ
>WENV180936898
ODTV01001010
[ODTV] human metagenome; G_DNA_Buccal mucosa
3307
3380
+
Lys
TTT
[ENA]
¢þ
>WENV180936900
ODTV01001010
[ODTV] human metagenome; G_DNA_Buccal mucosa
3488
3561
+
Lys
TTT
[ENA]
¢þ
>WENV180947589
ODUF01052461
[ODUF] human metagenome; G_DNA_Supragingival plaque
236
163
-
Lys
TTT
[ENA]
¢þ
>WENV181027527
ODXD01006746
[ODXD] human metagenome; G_DNA_Buccal mucosa
702
775
+
Lys
TTT
[ENA]
¢þ
>WENV183738477
PJUE01000004
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
158847
158774
-
Lys
TTT
[ENA]
¢þ
>WENV183740869
PJUF01014270
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1391
1318
-
Lys
TTT
[ENA]
¢þ
>C181226377
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
531817
531744
-
Lys
TTT
-
¡û
>C181226379
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
531614
531541
-
Lys
TTT
-
¡û
>C191065609
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
770866
770793
-
Lys
TTT
-
¡û
>C191065611
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
770666
770593
-
Lys
TTT
-
¡û
>C191120514
CP034160
Bacteroidota
Epilithonimonas vandammei H6466 [CP034160]
3049636
3049709
+
Lys
TTT
-
¡û
>C191120551
CP034161
Bacteroidota
Epilithonimonas vandammei F5649 [CP034161]
1183719
1183792
+
Lys
TTT
-
¡û
>C191185741
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
576949
576876
-
Lys
TTT
-
¡û
>C191185743
CP041029
Bacteroidota
Riemerella anatipestifer WJ4 [CP041029]
576750
576677
-
Lys
TTT
-
¡û
>W1911615624
PPEC01000001
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
357485
357558
+
Lys
TTT
[ENA]
¡û
>W1911615626
PPEC01000001
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
357688
357761
+
Lys
TTT
[ENA]
¡û
>W1911708535
QOVY01000018
Bacteroidota
Chryseobacterium sp. SC28 [QOVY]
50472
50545
+
Lys
TTT
[ENA]
¡û
>W1810191526
PKKR01000001
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
174975
175048
+
Lys
TTT
[ENA]
¡û
>W1810191528
PKKR01000001
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
175178
175251
+
Lys
TTT
[ENA]
¡û
>W1810583122
QEWX01000038
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
733
660
-
Lys
TTT
[ENA]
¡û
>C151010280
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1991131
1991206
+
Lys
TTT
[Ensembl]
¡û
>C151010282
CP006649
Bacteroidota
Riemerella anatipestifer CH3 [CP006649]
1991330
1991405
+
Lys
TTT
[Ensembl]
¡û
>C151018481
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
517286
517211
-
Lys
TTT
-
¡û
>C151018483
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
517083
517008
-
Lys
TTT
-
¡û
>C151025756
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
518719
518644
-
Lys
TTT
[Ensembl]
¡û
>C151025758
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
518517
518442
-
Lys
TTT
[Ensembl]
¡û
>C151025796
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
531767
531692
-
Lys
TTT
[Ensembl]
¡û
>C151025798
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
531564
531489
-
Lys
TTT
[Ensembl]
¡û
>C11118469
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
530278
530203
-
Lys
TTT
[Ensembl]
¡û
>C11118471
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
530075
530000
-
Lys
TTT
[Ensembl]
¡û
>C11118492
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1777893
1777968
+
Lys
TTT
[Ensembl]
¡û
>C11118494
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1778096
1778171
+
Lys
TTT
[Ensembl]
¡û
>W11141066
AENH01000027
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
138109
138034
-
Lys
TTT
[ENA]
¡û
>W11141068
AENH01000027
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
137906
137831
-
Lys
TTT
[ENA]
¡û
>W1511584112
LAVB01000004
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
50725
50800
+
Lys
TTT
[ENA]
¡û
>W1511584114
LAVB01000004
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
50926
51001
+
Lys
TTT
[ENA]
¡û
>C121012047
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
691797
691722
-
Lys
TTT
-
¡û
>C131006677
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1604487
1604562
+
Lys
TTT
[Ensembl]
¡û
>C131006679
CP003787
Bacteroidota
Riemerella anatipestifer RA-CH-1 [CP003787]
1604686
1604761
+
Lys
TTT
[Ensembl]
¡û
>C131011618
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
1199333
1199408
+
Lys
TTT
[Ensembl]
¡û
>C131011620
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
1199536
1199611
+
Lys
TTT
[Ensembl]
¡û
>W1610928919
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
495941
495866
-
Lys
TTT
[ENA]
¡û
>W1610928921
LUDG01000001
Bacteroidota
Riemerella anatipestifer [LUDG]
495738
495663
-
Lys
TTT
[ENA]
¡û
>W1610928950
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
291037
291112
+
Lys
TTT
[ENA]
¡û
>W1610928952
LUDH01000001
Bacteroidota
Riemerella anatipestifer [LUDH]
291240
291315
+
Lys
TTT
[ENA]
¡û
>W1610928987
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
850453
850378
-
Lys
TTT
[ENA]
¡û
>W1610928989
LUDI01000001
Bacteroidota
Riemerella anatipestifer [LUDI]
850254
850179
-
Lys
TTT
[ENA]
¡û
>W1610929024
LUDJ01000002
Bacteroidota
Riemerella anatipestifer [LUDJ]
11343
11418
+
Lys
TTT
[ENA]
¡û
>W1610929026
LUDJ01000002
Bacteroidota
Riemerella anatipestifer [LUDJ]
11546
11621
+
Lys
TTT
[ENA]
¡û
>W1610929064
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
499703
499628
-
Lys
TTT
[ENA]
¡û
>W1610929066
LUDK01000001
Bacteroidota
Riemerella anatipestifer [LUDK]
499500
499425
-
Lys
TTT
[ENA]
¡û
>W1610929094
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
121494
121569
+
Lys
TTT
[ENA]
¡û
>W1610929096
LUDL01000001
Bacteroidota
Riemerella anatipestifer [LUDL]
121697
121772
+
Lys
TTT
[ENA]
¡û
>W1610929153
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
121372
121447
+
Lys
TTT
[ENA]
¡û
>W1610929155
LUDM01000003
Bacteroidota
Riemerella anatipestifer [LUDM]
121575
121650
+
Lys
TTT
[ENA]
¡û
>W1610929189
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
121372
121447
+
Lys
TTT
[ENA]
¡û
>W1610929191
LUDN01000003
Bacteroidota
Riemerella anatipestifer [LUDN]
121575
121650
+
Lys
TTT
[ENA]
¡û
>W1610929218
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
321441
321366
-
Lys
TTT
[ENA]
¡û
>W1610929220
LUDO01000001
Bacteroidota
Riemerella anatipestifer [LUDO]
321238
321163
-
Lys
TTT
[ENA]
¡û
>W1610929249
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
121471
121546
+
Lys
TTT
[ENA]
¡û
>W1610929251
LUDP01000001
Bacteroidota
Riemerella anatipestifer [LUDP]
121674
121749
+
Lys
TTT
[ENA]
¡û
>W1610929290
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
321440
321365
-
Lys
TTT
[ENA]
¡û
>W1610929292
LUDQ01000001
Bacteroidota
Riemerella anatipestifer [LUDQ]
321237
321162
-
Lys
TTT
[ENA]
¡û
>W1610929332
LUDR01000008
Bacteroidota
Riemerella anatipestifer [LUDR]
99773
99698
-
Lys
TTT
[ENA]
¡û
>W1610929334
LUDR01000008
Bacteroidota
Riemerella anatipestifer [LUDR]
99574
99499
-
Lys
TTT
[ENA]
¡û
>W1610929362
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
496010
495935
-
Lys
TTT
[ENA]
¡û
>W1610929364
LUDS01000001
Bacteroidota
Riemerella anatipestifer [LUDS]
495807
495732
-
Lys
TTT
[ENA]
¡û
>W1610929403
LUDT01000019
Bacteroidota
Riemerella anatipestifer [LUDT]
32857
32932
+
Lys
TTT
[ENA]
¡û
>W1610929405
LUDT01000019
Bacteroidota
Riemerella anatipestifer [LUDT]
33057
33132
+
Lys
TTT
[ENA]
¡û
>W1610929434
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
324404
324329
-
Lys
TTT
[ENA]
¡û
>W1610929436
LUDU01000001
Bacteroidota
Riemerella anatipestifer [LUDU]
324201
324126
-
Lys
TTT
[ENA]
¡û
>W1610929465
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
177077
177152
+
Lys
TTT
[ENA]
¡û
>W1610929467
LUDV01000001
Bacteroidota
Riemerella anatipestifer [LUDV]
177280
177355
+
Lys
TTT
[ENA]
¡û
>W1710514149
FNAS01000006
Bacteroidota
Riemerella columbipharyngis [FNAS]
40830
40905
+
Lys
TTT
[ENA]
¡û
>W1710540562
FNWX01000005
Bacteroidota
Epilithonimonas hominis [FNWX]
24885
24810
-
Lys
TTT
[ENA]
¡û
>W1710587257
FQYI01000003
Bacteroidota
Cruoricaptor ignavus [FQYI]
128448
128521
+
Lys
TTT
[ENA]
¡û
>W1710587259
FQYI01000003
Bacteroidota
Cruoricaptor ignavus [FQYI]
128709
128784
+
Lys
TTT
[ENA]
¡û
>W1710589870
FRAM01000002
Bacteroidota
Epilithonimonas mollis molle [FRAM]
683088
683163
+
Lys
TTT
[ENA]
¡û
>W1710596334
FTMM01000021
Bacteroidota
Chryseobacterium sp. RU37D [FTMM]
17110
17185
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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