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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457049 (59 seq.)
>W1710852504
LLVU01000003
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
69042
69117
+
Trp
CCA
[ENA]
¡û
>W1710852593
LLVV01000070
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
148266
148341
+
Trp
CCA
[ENA]
¡û
>W1710894116
LNFK01000062
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
54323
54248
-
Trp
CCA
[ENA]
¡û
>W1711421714
MHZR01000029
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
15945
15870
-
Trp
CCA
[ENA]
¡û
>W1711421778
MHZS01000208
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
19884
19809
-
Trp
CCA
[ENA]
¡û
>W1711585669
MNZZ01000404
Alphaproteobacteria
Rhodobacteraceae bacterium CG2_30_10_405 [MNZZ]
3480
3405
-
Trp
CCA
[ENA]
¡û
>W131216083
ATVN01000021
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
49367
49292
-
Trp
CCA
[ENA]
¡û
>WENV180390948
OBPM01000060
[OBPM] marine metagenome; ENVO:00002010
21272
21197
-
Trp
CCA
[ENA]
¢þ
>WENV180391017
OBPM01001488
[OBPM] marine metagenome; ENVO:00002010
1604
1679
+
Trp
CCA
[ENA]
¢þ
>WENV180593832
OCOY01000294
[OCOY] marine metagenome; ENVO:00002010
324
399
+
Trp
CCA
[ENA]
¢þ
>WENV180593923
OCOY01003960
[OCOY] marine metagenome; ENVO:00002010
1517
1592
+
Trp
CCA
[ENA]
¢þ
>WENV181173074
OEIV011178660
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
171
96
-
Trp
CCA
[ENA]
¢þ
>WENV181226744
OFDN01000032
[OFDN] hot springs metagenome; Water
79119
79044
-
Trp
CCA
[ENA]
¢þ
>WENV181370468
OFQS01017650
[OFQS] freshwater metagenome; Freshwater Lake
176
251
+
Trp
CCA
[ENA]
¢þ
>WENV181378036
OFRA01064056
[OFRA] wastewater metagenome; Lake Maggiore Verbania
491
416
-
Trp
CCA
[ENA]
¢þ
>W141191547
AYPR01000005
Alphaproteobacteria
Rhodobacter capsulatus DE442 [AYPR]
101018
101093
+
Trp
CCA
[ENA]
¡û
>W141191695
AYPY01000003
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
149416
149341
-
Trp
CCA
[ENA]
¡û
>W141191757
AYPZ01000027
Alphaproteobacteria
Rhodobacter capsulatus YW2 [AYPZ]
101141
101216
+
Trp
CCA
[ENA]
¡û
>W141191812
AYQA01000038
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
101035
101110
+
Trp
CCA
[ENA]
¡û
>W141191840
AYQB01000006
Alphaproteobacteria
Rhodobacter capsulatus Y262 [AYQB]
101031
101106
+
Trp
CCA
[ENA]
¡û
>W141191886
AYQC01000005
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
101077
101152
+
Trp
CCA
[ENA]
¡û
>W141237314
BBJC01000004
Alphaproteobacteria
Falsirhodobacter sp. alg1 [BBJC]
315334
315259
-
Trp
CCA
[ENA]
¡û
>WENV170572945
FLOH01001557
[FLOH] marine metagenome; water
1318
1393
+
Trp
CCA
[ENA]
¢þ
>WENV170711444
LNFM01005271
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3382
3307
-
Trp
CCA
[ENA]
¢þ
>WENV170712406
LNFM01013031
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10653
10728
+
Trp
CCA
[ENA]
¢þ
>WENV170713808
LNFM01042604
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6
81
+
Trp
CCA
[ENA]
¢þ
>WENV170961824
MLJW01002014
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2091
2016
-
Trp
CCA
[ENA]
¢þ
>C181081637
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
392035
392110
+
Trp
CCA
-
¡û
>C181084396
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
373426
373501
+
Trp
CCA
-
¡û
>C181169759
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
387329
387404
+
Trp
CCA
-
¡û
>W1910744010
MHZT01000041
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130 [MHZT]
1165
1240
+
Trp
CCA
[ENA]
¡û
>W1910744055
MHZU01000039
Alphaproteobacteria
Rhodobacterales bacterium RIFCSPHIGHO2_12_FULL_62_75 [MHZU]
1167
1242
+
Trp
CCA
[ENA]
¡û
>W1911491909
OAOQ01000002
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
115914
115989
+
Trp
CCA
[ENA]
¡û
>W1810445041
PZKG01000083
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
17035
16960
-
Trp
CCA
[ENA]
¡û
>W1810672414
QJTK01000003
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
40895
40970
+
Trp
CCA
[ENA]
¡û
>W1810685827
QKZO01000009
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
148385
148460
+
Trp
CCA
[ENA]
¡û
>W1810686013
QKZS01000031
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
17733
17658
-
Trp
CCA
[ENA]
¡û
>W1810789421
QRGP01000002
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
243935
243860
-
Trp
CCA
[ENA]
¡û
>W10106915
ACYY01000004
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
890
965
+
Trp
CCA
[ENA]
¡û
>C10110600
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
322907
322982
+
Trp
CCA
[Ensembl]
¡û
>W11109204
ACYY01000004
Alphaproteobacteria
Rhodobacter sp. SW2 [ACYY]
890
965
+
Trp
CCA
[ENA]
¡û
>W1511698423
LGHT01000041
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
17948
17873
-
Trp
CCA
[ENA]
¡û
>W1511698452
LGHU01000067
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
22413
22338
-
Trp
CCA
[ENA]
¡û
>W1511698482
LGHV01000015
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
1538
1613
+
Trp
CCA
[ENA]
¡û
>C161043338
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
403614
403689
+
Trp
CCA
[Ensembl]
¡û
>W1610614684
LGIC01000084
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
23923
23848
-
Trp
CCA
[ENA]
¡û
>W1610626109
LIBR01000009
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-121220-bin24 [LIBR]
11035
10960
-
Trp
CCA
[ENA]
¡û
>W1610626513
LICH01000455
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
127
202
+
Trp
CCA
[ENA]
¡û
>W1610626696
LICP01000326
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
127
202
+
Trp
CCA
[ENA]
¡û
>W1610715643
LLVU01000003
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
69042
69117
+
Trp
CCA
[ENA]
¡û
>W1610715732
LLVV01000070
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
148266
148341
+
Trp
CCA
[ENA]
¡û
>W1610754382
LNFK01000062
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
54323
54248
-
Trp
CCA
[ENA]
¡û
>W1710514461
FNAY01000011
Alphaproteobacteria
Rhodobacter capsulatus [FNAY]
100609
100684
+
Trp
CCA
[ENA]
¡û
>W1710546407
FOCE01000022
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
1441
1516
+
Trp
CCA
[ENA]
¡û
>W1710546966
FOCO01000022
Alphaproteobacteria
Pseudorhodobacter antarcticus [FOCO]
21622
21547
-
Trp
CCA
[ENA]
¡û
>W1710735818
LGIC01000084
Alphaproteobacteria
Cypionkella psychrotolerans [LGIC]
23923
23848
-
Trp
CCA
[ENA]
¡û
>W1710757236
LIBR01000009
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-121220-bin24 [LIBR]
11035
10960
-
Trp
CCA
[ENA]
¡û
>W1710757640
LICH01000455
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120910-bin24 [LICH]
127
202
+
Trp
CCA
[ENA]
¡û
>W1710757823
LICP01000326
Alphaproteobacteria
Rhodobacter sp. BACL10 MAG-120419-bin15 [LICP]
127
202
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK