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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457109 (32 seq.)
>W1710878082
LMQQ01000002
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
527349
527424
+
Gly
TCC
[ENA]
¡û
>W1710878173
LMQS01000004
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
410
335
-
Gly
TCC
[ENA]
¡û
>W1710878390
LMQX01000003
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
883
808
-
Gly
TCC
[ENA]
¡û
>W131163869
ARAC01000001
Betaproteobacteria
Methylophilus sp. 42 [ARAC]
561051
561126
+
Gly
TCC
[ENA]
¡û
>W131164753
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
539524
539449
-
Gly
TCC
[ENA]
¡û
>W131170269
ARFK01000003
Betaproteobacteria
Methylophilus sp. 1 [ARFK]
1537108
1537183
+
Gly
TCC
[ENA]
¡û
>W131176231
ARJW01000012
Betaproteobacteria
Methylophilus methylotrophus DSM 46235 = ATCC 53528 [ARJW]
1467
1392
-
Gly
TCC
[ENA]
¡û
>C013376
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
269864
269939
+
Gly
TCC
[Ensembl]
¡û
>WENV181222883
OFDC01000493
[OFDC] hot springs metagenome; Water
335
260
-
Gly
TCC
[ENA]
¢þ
>WENV181857602
OGWO01018991
[OGWO] freshwater metagenome; freshwater
443
518
+
Gly
TCC
[ENA]
¢þ
>W141220050
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
1643269
1643344
+
Gly
TCC
[ENA]
¡û
>W141229546
BAMT01000006
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
189873
189948
+
Gly
TCC
[ENA]
¡û
>W141231915
BAUS01000004
Betaproteobacteria
Methylophilus sp. OH31 [BAUS]
521793
521868
+
Gly
TCC
[ENA]
¡û
>WENV183726677
PJTO01000064
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
164086
164161
+
Gly
TCC
[ENA]
¢þ
>WENV183736830
PJUD01000046
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
352
277
-
Gly
TCC
[ENA]
¢þ
>WENV183740616
PJUF01004516
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1479
1554
+
Gly
TCC
[ENA]
¢þ
>WENV170654537
JRYL01000222
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
195688
195763
+
Gly
TCC
[ENA]
¢þ
>W09101038
AADX02000024
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
13241
13166
-
Gly
TCC
[ENA]
¡û
>W141819356
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1225232
1225307
+
Gly
TCC
[ENA]
¡û
>C09107557
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
303451
303526
+
Gly
TCC
[Ensembl]
¡û
>C09107784
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
356906
356981
+
Gly
TCC
[Ensembl]
¡û
>W1910547747
FZOA01000004
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
1420
1345
-
Gly
TCC
[ENA]
¡û
>W1911624001
PQVH01000010
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
368
293
-
Gly
TCC
[ENA]
¡û
>C151089442
CP012020
Betaproteobacteria
Methylophilus sp. TWE2 [CP012020]
533956
534031
+
Gly
TCC
[Ensembl]
¡û
>ENV09001302
ABSR01000793
Freshwater sediment metagenome lwMethylamine_C1
2941
2866
-
Gly
TCC
[ENA]
¡û
>ENV09001319
ABSR01001339
Freshwater sediment metagenome lwMethylamine_C1
2880
2955
+
Gly
TCC
[ENA]
¡û
>C11114192
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
302923
302998
+
Gly
TCC
[Ensembl]
¡û
>W1511433416
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
626325
626250
-
Gly
TCC
[ENA]
¡û
>W1610740428
LMQQ01000002
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
527349
527424
+
Gly
TCC
[ENA]
¡û
>W1610740519
LMQS01000004
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
410
335
-
Gly
TCC
[ENA]
¡û
>W1610740736
LMQX01000003
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
883
808
-
Gly
TCC
[ENA]
¡û
>W1710520797
FNFX01000004
Betaproteobacteria
Methylophilus rhizosphaerae [FNFX]
1412
1337
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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