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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457154 (60 seq.)
>W1711178223
LWGO01000001
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
14983
14908
-
Phe
GAA
[ENA]
¡û
>W1711261929
LYXG01000021
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
14634
14709
+
Phe
GAA
[ENA]
¡û
>W1711688828
MSDO01000005
Gammaproteobacteria
Salinicola socius [MSDO]
18390
18465
+
Phe
GAA
[ENA]
¡û
>W1711688934
MSDP01000028
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
18498
18423
-
Phe
GAA
[ENA]
¡û
>W1711750450
MUMZ01000025
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
374
299
-
Phe
GAA
[ENA]
¡û
>W1711959298
NBYR01000011
Gammaproteobacteria
Halomonas sp. CSM-2 [NBYR]
140521
140446
-
Phe
GAA
[ENA]
¡û
>C171073684
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
1368517
1368442
-
Phe
GAA
-
¡û
>C171117515
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
863869
863794
-
Phe
GAA
-
¡û
>C171117979
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
2435539
2435614
+
Phe
GAA
-
¡û
>W131196510
ASTJ01000023
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
151990
151915
-
Phe
GAA
[ENA]
¡û
>W131221009
AUAB01000015
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
21249
21324
+
Phe
GAA
[ENA]
¡û
>WENV181403001
OFTZ01008646
[OFTZ] marine metagenome; seawater
318
392
+
Phe
GAA
[ENA]
¢þ
>WENV170243667
CEQO01175177
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
75
1
-
Phe
GAA
[ENA]
¢þ
>WENV170358824
CETK01143364
[CETK] marine metagenome genome assembly TARA_111_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1467
1542
+
Phe
GAA
[ENA]
¢þ
>WENV170939061
MDTG01319319
[MDTG] marine metagenome; seawater
2461
2536
+
Phe
GAA
[ENA]
¢þ
>WENV170965492
MTEU01003290
[MTEU] soil metagenome; naturally attenuated soil
13334
13409
+
Phe
GAA
[ENA]
¢þ
>WENV170966036
MTEV01012377
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
17546
17471
-
Phe
GAA
[ENA]
¢þ
>WENV170966530
MTEX01012805
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
18447
18372
-
Phe
GAA
[ENA]
¢þ
>C181052444
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
242192
242267
+
Phe
GAA
-
¡û
>W1911539904
ONZI01000005
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
17376
17451
+
Phe
GAA
[ENA]
¡û
>W1810062657
PDOG01000008
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
21680
21755
+
Phe
GAA
[ENA]
¡û
>W1810062723
PDOH01000047
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
35255
35180
-
Phe
GAA
[ENA]
¡û
>W1810177451
PJRN01000012
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
16229
16304
+
Phe
GAA
[ENA]
¡û
>W1810199972
PNRE01000093
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
27433
27358
-
Phe
GAA
[ENA]
¡û
>W1810199990
PNRF01000008
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
37533
37458
-
Phe
GAA
[ENA]
¡û
>W1810364747
PVTM01000004
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
291308
291233
-
Phe
GAA
[ENA]
¡û
>W1810387680
PXWD01000011
Gammaproteobacteria
Halomonas sp. ND22Bw [PXWD]
83864
83789
-
Phe
GAA
[ENA]
¡û
>W1810424685
PYUQ02000033
Gammaproteobacteria
Halomonas sp. SL1 [PYUQ]
123
48
-
Phe
GAA
[ENA]
¡û
>W1810444266
PZJN01000014
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
49532
49457
-
Phe
GAA
[ENA]
¡û
>W1810444346
PZJP01000005
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
17880
17955
+
Phe
GAA
[ENA]
¡û
>W1810444434
PZJQ01000005
Gammaproteobacteria
Salinicola halimionae CPA60 [PZJQ]
18247
18322
+
Phe
GAA
[ENA]
¡û
>W1810444456
PZJR01000001
Gammaproteobacteria
Salinicola sp. CPA57 [PZJR]
413295
413220
-
Phe
GAA
[ENA]
¡û
>W1810444538
PZJS01000003
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
628508
628433
-
Phe
GAA
[ENA]
¡û
>W1810444678
PZJU01000019
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
16185
16260
+
Phe
GAA
[ENA]
¡û
>W1810444760
PZJV01000007
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
17599
17674
+
Phe
GAA
[ENA]
¡û
>W1810624154
QHGY01000007
Gammaproteobacteria
Halomonas lactosivorans KCTC 52281 [QHGY]
16598
16673
+
Phe
GAA
[ENA]
¡û
>W1810673455
QJUB01000028
Gammaproteobacteria
Halomonas elongata MH25661 [QJUB]
21895
21970
+
Phe
GAA
[ENA]
¡û
>W1810758290
QPIJ01000009
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
14558
14633
+
Phe
GAA
[ENA]
¡û
>W1810787010
QRDJ01000011
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
17253
17328
+
Phe
GAA
[ENA]
¡û
>W1510071578
CDGR01000035
Gammaproteobacteria
Halomonas salina B6 [CDGR]
33157
33232
+
Phe
GAA
[ENA]
¡û
>C11110102
FN869568
Gammaproteobacteria
Halomonas elongata DSM 2581 type strain: DSM 2581 [FN869568]
3548691
3548766
+
Phe
GAA
[Ensembl]
¡û
>W1511270573
JOKD01000015
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
15829
15904
+
Phe
GAA
[ENA]
¡û
>W1511319658
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1580411
1580336
-
Phe
GAA
[ENA]
¡û
>W1511500058
JXAS01000023
Gammaproteobacteria
Halomonas caseinilytica WD26 [JXAS]
39139
39214
+
Phe
GAA
[ENA]
¡û
>W1511565208
LAEZ01000031
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
53427
53352
-
Phe
GAA
[ENA]
¡û
>W1610082134
BDEO01000005
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
114687
114762
+
Phe
GAA
[ENA]
¡û
>W1610082176
BDEP01000001
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
15225
15150
-
Phe
GAA
[ENA]
¡û
>W121063543
AJKS02000027
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
15258
15333
+
Phe
GAA
[ENA]
¡û
>W121123937
BAEU01000081
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
16179
16254
+
Phe
GAA
[ENA]
¡û
>W1611023852
LYXG01000021
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
14634
14709
+
Phe
GAA
[ENA]
¡û
>W1710080907
BDEO01000005
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [BDEO]
114687
114762
+
Phe
GAA
[ENA]
¡û
>W1710080949
BDEP01000001
Gammaproteobacteria
Halomonas caseinilytica [BDEP]
15225
15150
-
Phe
GAA
[ENA]
¡û
>W1710519443
FNES01000024
Gammaproteobacteria
Halomonas gudaonensis [FNES]
8399
8324
-
Phe
GAA
[ENA]
¡û
>W1710521378
FNGI01000011
Gammaproteobacteria
Halomonas muralis [FNGI]
143308
143233
-
Phe
GAA
[ENA]
¡û
>W1710539169
FNVC01000022
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
70941
70866
-
Phe
GAA
[ENA]
¡û
>W1710544875
FOBC01000012
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
9194
9269
+
Phe
GAA
[ENA]
¡û
>W1710545761
FOBT01000010
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
114857
114932
+
Phe
GAA
[ENA]
¡û
>W1710552240
FOGS01000006
Gammaproteobacteria
Halomonas subterranea [FOGS]
225758
225683
-
Phe
GAA
[ENA]
¡û
>W1710558531
FOLY01000009
Gammaproteobacteria
Kushneria avicenniae [FOLY]
59922
59847
-
Phe
GAA
[ENA]
¡û
>W1710589835
FRAL01000009
Gammaproteobacteria
Halomonas caseinilytica sinaiensis [FRAL]
15534
15459
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK