This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457161 (39 seq.)
>W1710870828
LMKV01000005
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
19663
19738
+
Phe
GAA
[ENA]
¡û
>W1711082186
LSTR01000031
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
47972
48047
+
Phe
GAA
[ENA]
¡û
>W1711083855
LSVG01000018
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
82540
82615
+
Phe
GAA
[ENA]
¡û
>W1711146788
LVJD01000295
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
4319
4244
-
Phe
GAA
[ENA]
¡û
>W1712105779
NISJ01000007
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
7709
7634
-
Phe
GAA
[ENA]
¡û
>W131002992
AGZU01000007
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
795296
795371
+
Phe
GAA
[ENA]
¡û
>W131052364
AMYX01000007
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
100943
101018
+
Phe
GAA
[ENA]
¡û
>WENV181227806
OFDN01048357
[OFDN] hot springs metagenome; Water
651
576
-
Phe
GAA
[ENA]
¢þ
>WENV183729661
PJTR01000005
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
121269
121344
+
Phe
GAA
[ENA]
¢þ
>WENV183730407
PJTS01000007
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
121269
121344
+
Phe
GAA
[ENA]
¢þ
>WENV183733027
PJTY01000021
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
247312
247387
+
Phe
GAA
[ENA]
¢þ
>WENV183734477
PJTZ01009940
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
209
134
-
Phe
GAA
[ENA]
¢þ
>WENV183736845
PJUD01000055
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
152423
152498
+
Phe
GAA
[ENA]
¢þ
>C181047619
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
1303988
1303913
-
Phe
GAA
-
¡û
>C181089685
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
4133842
4133917
+
Phe
GAA
-
¡û
>W141520462
JGVR01000023
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
23306
23231
-
Phe
GAA
[ENA]
¡û
>C191063635
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
3251878
3251953
+
Phe
GAA
-
¡û
>C191103882
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
3362836
3362911
+
Phe
GAA
-
¡û
>C191163673
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
135701
135776
+
Phe
GAA
-
¡û
>W141807771
JPOU01000062
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
1244
1169
-
Phe
GAA
[ENA]
¡û
>W1910199116
FBVT01000007
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
1722
1647
-
Phe
GAA
[ENA]
¡û
>W1910199176
FBVU01000021
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
1720
1645
-
Phe
GAA
[ENA]
¡û
>W1910199254
FBVV01000044
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
1720
1645
-
Phe
GAA
[ENA]
¡û
>W1910199307
FBVW01000044
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
78699
78774
+
Phe
GAA
[ENA]
¡û
>W1910199333
FBVX01000023
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
1720
1645
-
Phe
GAA
[ENA]
¡û
>W1910199980
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
3113385
3113310
-
Phe
GAA
[ENA]
¡û
>W1911114820
NOIW01000041
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
37443
37368
-
Phe
GAA
[ENA]
¡û
>W1911688312
QLJK01000022
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
94695
94770
+
Phe
GAA
[ENA]
¡û
>W1911722439
QRAL01000014
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
97078
97003
-
Phe
GAA
[ENA]
¡û
>W1510756966
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
172604
172529
-
Phe
GAA
[ENA]
¡û
>W1510941355
JFFT01000053
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
23746
23821
+
Phe
GAA
[ENA]
¡û
>W11176464
AFXE01000167
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
27011
27086
+
Phe
GAA
[ENA]
¡û
>W121068968
AJVL01000069
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
9374
9299
-
Phe
GAA
[ENA]
¡û
>W1610733174
LMKV01000005
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
19663
19738
+
Phe
GAA
[ENA]
¡û
>W1610920971
LSTR01000031
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
47972
48047
+
Phe
GAA
[ENA]
¡û
>W1610922608
LSVG01000018
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
82540
82615
+
Phe
GAA
[ENA]
¡û
>W1710542213
FNYZ01000002
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
287898
287823
-
Phe
GAA
[ENA]
¡û
>W1710551581
FOGE01000017
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
119557
119632
+
Phe
GAA
[ENA]
¡û
>W1710592183
FRCG01000011
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
28216
28141
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK