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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457172 (19 seq.)
>W131163174
AQZO01000005
Gammaproteobacteria
Thioalkalivibrio thiocyanodenitrificans ARhD 1 [AQZO]
1658050
1657975
-
Phe
GAA
[ENA]
¡û
>W131175498
ARJH01000072
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus ALJ17 [ARJH]
24248
24173
-
Phe
GAA
[ENA]
¡û
>W141022633
AJUE01000036
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila ATCC 51935 [AJUE]
87222
87297
+
Phe
GAA
[ENA]
¡û
>WENV180296994
OBJA01007128
[OBJA] soil metagenome; sediment, water from around vicinity
238
313
+
Phe
GAA
[ENA]
¢þ
>WENV183093436
OLMB01000215
[OLMB] soil metagenome; soil
79
4
-
Phe
GAA
[ENA]
¢þ
>WENV183512651
OMKS01000983
[OMKS] sediment metagenome; hot spring sediment
6762
6687
-
Phe
GAA
[ENA]
¢þ
>WENV170682761
LFIK01001098
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
6062
5987
-
Phe
GAA
[ENA]
¢þ
>W09113244
ABYM01000006
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGR7 [ABYM]
137340
137415
+
Phe
GAA
[ENA]
¡û
>W1910749869
MJEV01000074
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MJEV]
23269
23344
+
Phe
GAA
[ENA]
¡û
>C09110611
CP001339
Gammaproteobacteria
Thioalkalivibrio sulfidiphilus HL-EbGr7 HL-EbGR7 [CP001339]
3087306
3087231
-
Phe
GAA
[Ensembl]
¡û
>W1910826186
MWQP01000012
Gammaproteobacteria
Pseudofulvimonas gallinarii DSM 21944 [MWQP]
52346
52421
+
Phe
GAA
[ENA]
¡û
>W1810760187
QPJY01000005
Gammaproteobacteria
Thioalbus denitrificans DSM 26407 [QPJY]
148867
148792
-
Phe
GAA
[ENA]
¡û
>C151016153
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
318275
318350
+
Phe
GAA
[Ensembl]
¡û
>W11177731
AGBG01000019
Gammaproteobacteria
Ectothiorhodospira sp. PHS-1 [AGBG]
45663
45738
+
Phe
GAA
[ENA]
¡û
>W11178567
AGFB01000001
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
566360
566285
-
Phe
GAA
[ENA]
¡û
>C161005778
CP007268
Gammaproteobacteria
Ectothiorhodospira haloalkaliphila A [CP007268]
3117868
3117793
-
Phe
GAA
-
¡û
>C161038411
CP011994
Gammaproteobacteria
Ectothiorhodospira sp. BSL-9 [CP011994]
1509843
1509918
+
Phe
GAA
[Ensembl]
¡û
>C131010932
CP003989
Gammaproteobacteria
Thioalkalivibrio nitratireducens DSM 14787 [CP003989]
3729717
3729642
-
Phe
GAA
[Ensembl]
¡û
>W1710543523
FOAA01000022
Gammaproteobacteria
Ectothiorhodospira marina [FOAA]
22351
22426
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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