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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457348 (84 seq.)
>W1711009549
LQQT01000048
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
169903
169828
-
Glu
CTC
[ENA]
¡û
>W1711078695
LSNC01000050
Alphaproteobacteria
Methylorubrum populi [LSNC]
11026
10951
-
Glu
CTC
[ENA]
¡û
>W1711179407
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
30756
30831
+
Glu
CTC
[ENA]
¡û
>W1711179443
LWHQ01000047
Alphaproteobacteria
Methylobacterium platani [LWHQ]
59026
59101
+
Glu
CTC
[ENA]
¡û
>PL171000077
AP014705
Alphaproteobacteria
Methylobacterium aquaticum MA-22A plasmid:pMaq22A_1p
136849
136774
-
Glu
CTC
[ENA]
¡û
>W131051744
AMXU01000080
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
374
299
-
Glu
CTC
[ENA]
¡û
>W131163798
ARAA01000075
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
83477
83402
-
Glu
CTC
[ENA]
¡û
>W131186351
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
2283763
2283838
+
Glu
CTC
[ENA]
¡û
>W131186607
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
3758816
3758741
-
Glu
CTC
[ENA]
¡û
>C171072677
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
2878605
2878530
-
Glu
CTC
-
¡û
>w026467
ABAY01000038
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
21449
21524
+
Glu
CTC
[ENA]
¡û
>WENV181167165
OEIU01011934
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1671
1596
-
Glu
CTC
[ENA]
¢þ
>W08006132
ABIP01000004
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
261949
261877
-
Glu
CTC
[ENA]
¡û
>WENV181307838
OFIS01000003
[OFIS] sludge metagenome; sludge
396021
396096
+
Glu
CTC
[ENA]
¢þ
>WENV181311506
OFJB01003234
[OFJB] sludge metagenome; sludge
1
76
+
Glu
CTC
[ENA]
¢þ
>WENV181311588
OFJB01005128
[OFJB] sludge metagenome; sludge
3971
4046
+
Glu
CTC
[ENA]
¢þ
>WENV181311597
OFJB01005322
[OFJB] sludge metagenome; sludge
1
76
+
Glu
CTC
[ENA]
¢þ
>WENV181402006
OFTY01000027
[OFTY] sludge metagenome; sludge
130558
130633
+
Glu
CTC
[ENA]
¢þ
>C08000341
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
322656
322584
-
Glu
CTC
[Ensembl]
¡û
>C08006444
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
7547270
7547345
+
Glu
CTC
[Ensembl]
¡û
>W141278488
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
4532852
4532927
+
Glu
CTC
[ENA]
¡û
>W141278818
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
3807306
3807231
-
Glu
CTC
[ENA]
¡û
>C08006629
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
1000708
1000783
+
Glu
CTC
[Ensembl]
¡û
>WENV183726433
PJQF01197190
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
197
272
+
Glu
CTC
[ENA]
¢þ
>WENV183731149
PJTS01013355
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
32
107
+
Glu
CTC
[ENA]
¢þ
>WENV170594781
FUFK011469064
[FUFK] metagenome; unknown
301
376
+
Glu
CTC
[ENA]
¢þ
>C181000341
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
1092919
1092994
+
Glu
CTC
-
¡û
>C181179973
CP029550
Alphaproteobacteria
Methylobacterium durans 17SD2-17 [CP029550]
1415434
1415509
+
Glu
CTC
-
¡û
>C181180079
CP029551
Alphaproteobacteria
Methylobacterium radiodurans 17Sr1-43 [CP029551]
408656
408581
-
Glu
CTC
-
¡û
>C181180102
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2698111
2698186
+
Glu
CTC
-
¡û
>C181180131
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4861407
4861332
-
Glu
CTC
-
¡û
>C181180220
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
5191462
5191387
-
Glu
CTC
-
¡û
>C181180240
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
2289266
2289191
-
Glu
CTC
-
¡û
>W09107204
ABFR01000019
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
67472
67547
+
Glu
CTC
[ENA]
¡û
>W141730048
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
928873
928948
+
Glu
CTC
[ENA]
¡û
>W141815702
JQJH01000004
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
263233
263308
+
Glu
CTC
[ENA]
¡û
>W1910006599
BAUX01000001
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
433225
433300
+
Glu
CTC
[ENA]
¡û
>C09107854
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
7695546
7695621
+
Glu
CTC
[Ensembl]
¡û
>W1911708556
QOWC01000039
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
46175
46250
+
Glu
CTC
[ENA]
¡û
>W1810079895
PELK01001516
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
5758
5833
+
Glu
CTC
[ENA]
¡û
>W1810368575
PVZS01000001
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
151167
151092
-
Glu
CTC
[ENA]
¡û
>C151094768
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
596521
596446
-
Glu
CTC
-
¡û
>W1510741104
CYHC01000001
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
430446
430371
-
Glu
CTC
[ENA]
¡û
>W1511400877
JTHF01000038
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
15477
15402
-
Glu
CTC
[ENA]
¡û
>W1511400901
JTHF01000189
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
2972
3047
+
Glu
CTC
[ENA]
¡û
>W1511400922
JTHG01000013
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
13889
13964
+
Glu
CTC
[ENA]
¡û
>W1511400957
JTHG01000134
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
12867
12942
+
Glu
CTC
[ENA]
¡û
>W1511507886
JXOD01000104
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
685
760
+
Glu
CTC
[ENA]
¡û
>W1511507887
JXOD01000117
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
119
194
+
Glu
CTC
[ENA]
¡û
>W1511563222
LABX01000018
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
71779
71704
-
Glu
CTC
[ENA]
¡û
>W1511563252
LABX01000138
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
16261
16336
+
Glu
CTC
[ENA]
¡û
>W1511563322
LABY01000171
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
70117
70042
-
Glu
CTC
[ENA]
¡û
>W1511563373
LABZ01000165
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
8657
8732
+
Glu
CTC
[ENA]
¡û
>W1511563383
LABZ01000178
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
26932
27007
+
Glu
CTC
[ENA]
¡û
>C161001194
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
738348
738273
-
Glu
CTC
[Ensembl]
¡û
>W1610043173
BAZP01000227
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2730
2655
-
Glu
CTC
[ENA]
¡û
>W1610047423
BBDG01001717
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
92
167
+
Glu
CTC
[ENA]
¡û
>W121110806
ALIQ01000215
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
3282
3357
+
Glu
CTC
[ENA]
¡û
>W1610590439
LDRL01000114
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
15467
15392
-
Glu
CTC
[ENA]
¡û
>W1610590442
LDRL01000119
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
10282
10207
-
Glu
CTC
[ENA]
¡û
>W1610590512
LDRM01000118
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
10031
9956
-
Glu
CTC
[ENA]
¡û
>W1610590514
LDRM01000129
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
13154
13229
+
Glu
CTC
[ENA]
¡û
>W1610590577
LDRN01000104
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
15721
15646
-
Glu
CTC
[ENA]
¡û
>W1610590586
LDRN01000116
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
13014
13089
+
Glu
CTC
[ENA]
¡û
>W1610631738
LIOL01000001
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
430446
430371
-
Glu
CTC
[ENA]
¡û
>W1610858069
LQQT01000048
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
169903
169828
-
Glu
CTC
[ENA]
¡û
>W1610917605
LSNC01000050
Alphaproteobacteria
Methylorubrum populi [LSNC]
11026
10951
-
Glu
CTC
[ENA]
¡û
>W1610987308
LWHQ01000013
Alphaproteobacteria
Methylobacterium platani [LWHQ]
30756
30831
+
Glu
CTC
[ENA]
¡û
>W1610987344
LWHQ01000047
Alphaproteobacteria
Methylobacterium platani [LWHQ]
59026
59101
+
Glu
CTC
[ENA]
¡û
>W1710040333
BAZP01000227
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2730
2655
-
Glu
CTC
[ENA]
¡û
>W1710044028
BBDG01001717
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
92
167
+
Glu
CTC
[ENA]
¡û
>W1710548789
FOEB01000001
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
306408
306483
+
Glu
CTC
[ENA]
¡û
>W1710548802
FOEB01000003
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
179544
179619
+
Glu
CTC
[ENA]
¡û
>W1710560672
FONO01000008
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
87460
87385
-
Glu
CTC
[ENA]
¡û
>W1710560707
FONO01000048
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
18243
18318
+
Glu
CTC
[ENA]
¡û
>W1710579049
FPCB01000012
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
107850
107925
+
Glu
CTC
[ENA]
¡û
>W1710579070
FPCB01000034
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
34176
34101
-
Glu
CTC
[ENA]
¡û
>W1710709719
LDRL01000114
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
15467
15392
-
Glu
CTC
[ENA]
¡û
>W1710709722
LDRL01000119
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
10282
10207
-
Glu
CTC
[ENA]
¡û
>W1710709792
LDRM01000118
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
10031
9956
-
Glu
CTC
[ENA]
¡û
>W1710709794
LDRM01000129
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
13154
13229
+
Glu
CTC
[ENA]
¡û
>W1710709857
LDRN01000104
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
15721
15646
-
Glu
CTC
[ENA]
¡û
>W1710709866
LDRN01000116
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
13014
13089
+
Glu
CTC
[ENA]
¡û
>W1710764623
LIOL01000001
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
430446
430371
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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