This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457351 (31 seq.)
>W1710797285
LJSX01000035
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
22736
22811
+
Glu
TTC
[ENA]
¡û
>W1711179450
LWHQ01000063
Alphaproteobacteria
Methylobacterium platani [LWHQ]
31654
31729
+
Glu
TTC
[ENA]
¡û
>W131163769
ARAA01000030
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
400530
400605
+
Glu
TTC
[ENA]
¡û
>WENV180020514
FTCZ01005187
[FTCZ] metagenome; soil
3921
3996
+
Glu
TTC
[ENA]
¢þ
>W08006149
ABIP01000013
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
53530
53458
-
Glu
TTC
[ENA]
¡û
>WENV181234049
OFET01001196
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
8104
8179
+
Glu
TTC
[ENA]
¢þ
>WENV181234542
OFEU01000319
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
22692
22767
+
Glu
TTC
[ENA]
¢þ
>C08006464
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
3221379
3221307
-
Glu
TTC
[Ensembl]
¡û
>WENV170682765
LFIK01001126
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
12246
12321
+
Glu
TTC
[ENA]
¢þ
>WENV170683579
LFIK01016213
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
5428
5503
+
Glu
TTC
[ENA]
¢þ
>C181180149
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
2516124
2516049
-
Glu
TTC
-
¡û
>C181180198
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
3351744
3351819
+
Glu
TTC
-
¡û
>C09107839
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
4276195
4276270
+
Glu
TTC
[Ensembl]
¡û
>W1911708575
QOWC01000155
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
19347
19422
+
Glu
TTC
[ENA]
¡û
>W1810079867
PELK01000740
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
1225
1300
+
Glu
TTC
[ENA]
¡û
>W1511400966
JTHG01000205
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
9980
9905
-
Glu
TTC
[ENA]
¡û
>W1511507885
JXOD01000098
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
16125
16200
+
Glu
TTC
[ENA]
¡û
>W1511563233
LABX01000048
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
35613
35688
+
Glu
TTC
[ENA]
¡û
>W1511563363
LABZ01000121
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
10301
10376
+
Glu
TTC
[ENA]
¡û
>C161001136
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1226396
1226471
+
Glu
TTC
[Ensembl]
¡û
>W1610516215
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1371148
1371073
-
Glu
TTC
[ENA]
¡û
>W1610590517
LDRM01000133
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
2651
2576
-
Glu
TTC
[ENA]
¡û
>W1610590549
LDRN01000045
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
81538
81613
+
Glu
TTC
[ENA]
¡û
>W1610661242
LJSX01000035
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [LJSX]
22736
22811
+
Glu
TTC
[ENA]
¡û
>W1610987351
LWHQ01000063
Alphaproteobacteria
Methylobacterium platani [LWHQ]
31654
31729
+
Glu
TTC
[ENA]
¡û
>W1710501506
FMBM01000002
Alphaproteobacteria
Saliniramus fredricksonii HL-109 [FMBM]
1371148
1371073
-
Glu
TTC
[ENA]
¡û
>W1710548809
FOEB01000004
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
336162
336087
-
Glu
TTC
[ENA]
¡û
>W1710560693
FONO01000032
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
933
858
-
Glu
TTC
[ENA]
¡û
>W1710579062
FPCB01000026
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
20279
20354
+
Glu
TTC
[ENA]
¡û
>W1710709797
LDRM01000133
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
2651
2576
-
Glu
TTC
[ENA]
¡û
>W1710709829
LDRN01000045
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
81538
81613
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK