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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457363 (27 seq.)
>W1711051690
LRSE01000003
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
602
527
-
Trp
CCA
[ENA]
¡û
>W1711261676
LYWY01000034
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
207887
207812
-
Trp
CCA
[ENA]
¡û
>W1711387048
MEGD01000020
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
96433
96358
-
Trp
CCA
[ENA]
¡û
>W1711503927
MKUB01000132
Alphaproteobacteria
Sphingomonadales bacterium 63-6 [MKUB]
6090
6165
+
Trp
CCA
[ENA]
¡û
>W141230403
BASZ01000012
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
14616
14541
-
Trp
CCA
[ENA]
¡û
>WENV170010979
APMI01037546
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
760
835
+
Trp
CCA
[ENA]
¢þ
>C191121060
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2405602
2405677
+
Trp
CCA
-
¡û
>C191170957
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
1970329
1970404
+
Trp
CCA
-
¡û
>W1910822148
MWMO01000005
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
284070
283995
-
Trp
CCA
[ENA]
¡û
>W1810121224
PHUF01000003
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
440014
440089
+
Trp
CCA
[ENA]
¡û
>W1810195706
PKRT01000002
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
305740
305665
-
Trp
CCA
[ENA]
¡û
>C151048366
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3331540
3331615
+
Trp
CCA
[Ensembl]
¡û
>C151082914
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
2963846
2963921
+
Trp
CCA
-
¡û
>W1510012842
BBNP01000045
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
42325
42400
+
Trp
CCA
[ENA]
¡û
>W1510019744
BBXA01000026
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
49865
49790
-
Trp
CCA
[ENA]
¡û
>C11116170
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
1933253
1933328
+
Trp
CCA
[Ensembl]
¡û
>W1511397996
JTDI01000001
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
357191
357116
-
Trp
CCA
[ENA]
¡û
>W1610071229
BCTX01000022
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
16215
16140
-
Trp
CCA
[ENA]
¡û
>W121009684
AGFM01000009
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
114818
114743
-
Trp
CCA
[ENA]
¡û
>W1610535230
JRQQ01000009
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
196861
196936
+
Trp
CCA
[ENA]
¡û
>W1610550570
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3221273
3221348
+
Trp
CCA
[ENA]
¡û
>W1610892819
LRSE01000003
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
602
527
-
Trp
CCA
[ENA]
¡û
>W1611023651
LYWY01000034
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
207887
207812
-
Trp
CCA
[ENA]
¡û
>W1710068594
BCTX01000022
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
16215
16140
-
Trp
CCA
[ENA]
¡û
>W1710562071
FOOR01000007
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
117113
117038
-
Trp
CCA
[ENA]
¡û
>W1710637699
JRQQ01000009
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
196861
196936
+
Trp
CCA
[ENA]
¡û
>W1710660333
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3221273
3221348
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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