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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457364 (120 seq.)
>W1710785429
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
47027
47102
+
Thr
TGT
[ENA]
¡û
>W1710864992
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
727455
727530
+
Thr
TGT
[ENA]
¡û
>W1710866214
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1952914
1952989
+
Thr
TGT
[ENA]
¡û
>W1710867410
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
492645
492570
-
Thr
TGT
[ENA]
¡û
>W1710912507
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
172123
172198
+
Thr
TGT
[ENA]
¡û
>W1710912576
LNRS01000006
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
276725
276650
-
Thr
TGT
[ENA]
¡û
>W1710912631
LNRT01000020
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
35567
35492
-
Thr
TGT
[ENA]
¡û
>W1710912646
LNRU01000003
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
219531
219606
+
Thr
TGT
[ENA]
¡û
>W1710912719
LNRV01000028
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
29035
29110
+
Thr
TGT
[ENA]
¡û
>W1710912762
LNRW01000026
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
29039
29114
+
Thr
TGT
[ENA]
¡û
>W1710912806
LNRX01000026
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
35576
35501
-
Thr
TGT
[ENA]
¡û
>W1710912816
LNRY01000001
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
265284
265209
-
Thr
TGT
[ENA]
¡û
>W1711051695
LRSE01000004
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
140124
140049
-
Thr
TGT
[ENA]
¡û
>W1711072898
LSIA01000116
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
16050
15975
-
Thr
TGT
[ENA]
¡û
>W1711253288
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1854816
1854891
+
Thr
TGT
[ENA]
¡û
>W1711259791
LYVN01000102
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
7950
8025
+
Thr
TGT
[ENA]
¡û
>W1711261721
LYWZ01000020
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
250467
250392
-
Thr
TGT
[ENA]
¡û
>W1711437801
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
2014206
2014131
-
Thr
TGT
[ENA]
¡û
>W1711766320
MUYH01000001
Alphaproteobacteria
Erythrobacter sanguineus [MUYH]
263015
262940
-
Thr
TGT
[ENA]
¡û
>W1711793287
MWLM01000064
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
87247
87172
-
Thr
TGT
[ENA]
¡û
>W1712105777
NISJ01000006
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
195785
195710
-
Thr
TGT
[ENA]
¡û
>C171056584
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
3658910
3658835
-
Thr
TGT
-
¡û
>C171094561
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
2047497
2047572
+
Thr
TGT
-
¡û
>C171096156
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
1854816
1854891
+
Thr
TGT
-
¡û
>C171128446
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
617469
617394
-
Thr
TGT
-
¡û
>W131196359
ASTG01000013
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
110332
110407
+
Thr
TGT
[ENA]
¡û
>C014697
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2752877
2752952
+
Thr
TGT
[Ensembl]
¡û
>WENV180020571
FTCZ01006300
[FTCZ] metagenome; soil
4641
4716
+
Thr
TGT
[ENA]
¢þ
>W141077948
ATHL01000055
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
119169
119094
-
Thr
TGT
[ENA]
¡û
>WENV181172848
OEIV011024929
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
66
141
+
Thr
TGT
[ENA]
¢þ
>WENV181223027
OFDC01001252
[OFDC] hot springs metagenome; Water
10195
10270
+
Thr
TGT
[ENA]
¢þ
>W141230367
BASZ01000001
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
671645
671720
+
Thr
TGT
[ENA]
¡û
>WENV183725799
PJQF01018142
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
165
90
-
Thr
TGT
[ENA]
¢þ
>WENV183726698
PJTO01000079
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
111720
111795
+
Thr
TGT
[ENA]
¢þ
>WENV183730375
PJTS01000001
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
799859
799784
-
Thr
TGT
[ENA]
¢þ
>WENV183731491
PJTT01000009
[PJTT] soil metagenome; Soil (2) enriched on wood chips
57684
57759
+
Thr
TGT
[ENA]
¢þ
>WENV183732918
PJTY01000001
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
275564
275639
+
Thr
TGT
[ENA]
¢þ
>WENV183733953
PJTZ01000006
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
528427
528352
-
Thr
TGT
[ENA]
¢þ
>WENV183738031
PJUD01070673
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
700
775
+
Thr
TGT
[ENA]
¢þ
>WENV183738467
PJUE01000003
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
592208
592133
-
Thr
TGT
[ENA]
¢þ
>WENV183739131
PJUE01002076
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2268
2343
+
Thr
TGT
[ENA]
¢þ
>WENV170176195
CEOS01049883
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4063
4138
+
Thr
TGT
[ENA]
¢þ
>WENV170191929
CEPD01087743
[CEPD] marine metagenome genome assembly TARA_064_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
411
+
Thr
TGT
[ENA]
¢þ
>WENV170277965
CERQ01041161
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9093
9018
-
Thr
TGT
[ENA]
¢þ
>WENV170553264
CXWK01012896
[CXWK] wastewater metagenome; activated sludge
761
836
+
Thr
TGT
[ENA]
¢þ
>W141484957
JFYZ01000024
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
59608
59533
-
Thr
TGT
[ENA]
¡û
>W09100333
AAAV03000008
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
33413
33488
+
Thr
TGT
[ENA]
¡û
>C191000356
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
2528742
2528817
+
Thr
TGT
-
¡û
>C191002578
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
3452832
3452907
+
Thr
TGT
-
¡û
>C191057051
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
3181585
3181660
+
Thr
TGT
-
¡û
>C191121084
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
2967166
2967091
-
Thr
TGT
-
¡û
>C191163827
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1103284
1103209
-
Thr
TGT
-
¡û
>W1910199130
FBVT01000013
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
68357
68282
-
Thr
TGT
[ENA]
¡û
>W1910199172
FBVU01000012
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
68247
68172
-
Thr
TGT
[ENA]
¡û
>W1910199215
FBVV01000004
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
53389
53464
+
Thr
TGT
[ENA]
¡û
>W1910199267
FBVW01000001
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
68245
68170
-
Thr
TGT
[ENA]
¡û
>W1910199330
FBVX01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
53118
53193
+
Thr
TGT
[ENA]
¡û
>W1910199995
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
908412
908337
-
Thr
TGT
[ENA]
¡û
>W1910548711
FZOS01000006
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
11723
11798
+
Thr
TGT
[ENA]
¡û
>W1910651529
LYMM01000073
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
152243
152318
+
Thr
TGT
[ENA]
¡û
>SRA1001817
SRR001308.69686
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
161
-
Thr
TGT
[SRA]
>W1810109421
PHHF01000076
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
252430
252355
-
Thr
TGT
[ENA]
¡û
>W1810120385
PHSO01000004
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
598112
598187
+
Thr
TGT
[ENA]
¡û
>W1810121227
PHUF01000003
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
640545
640470
-
Thr
TGT
[ENA]
¡û
>W1810195448
PKRO01000003
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
30202
30277
+
Thr
TGT
[ENA]
¡û
>W1810239595
PPSM01000005
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
29806
29881
+
Thr
TGT
[ENA]
¡û
>SRA1005772
SRR014587.81709
Metagenomic analysis of viruses in reclaimed water (SRP000673)
72
147
+
Thr
TGT
[SRA]
>SRA1005805
SRR014587.185023
Metagenomic analysis of viruses in reclaimed water (SRP000673)
176
101
-
Thr
TGT
[SRA]
>SRA1005831
SRR014587.261243
Metagenomic analysis of viruses in reclaimed water (SRP000673)
102
27
-
Thr
TGT
[SRA]
>W1810677144
QKMM01000017
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
42119
42044
-
Thr
TGT
[ENA]
¡û
>W1810789400
QRGP01000001
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
1892143
1892218
+
Thr
TGT
[ENA]
¡û
>C151044384
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3124995
3125070
+
Thr
TGT
[Ensembl]
¡û
>C151048354
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
1507588
1507663
+
Thr
TGT
[Ensembl]
¡û
>C151082906
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
1363110
1363185
+
Thr
TGT
-
¡û
>C151086199
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
2567954
2568029
+
Thr
TGT
[Ensembl]
¡û
>W1510015799
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
1009950
1009875
-
Thr
TGT
[ENA]
¡û
>W1510024387
CCBH010000148
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
64541
64466
-
Thr
TGT
[ENA]
¡û
>C11116204
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
649675
649600
-
Thr
TGT
[Ensembl]
¡û
>W1510756958
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
1364576
1364501
-
Thr
TGT
[ENA]
¡û
>W1511221162
JNFC01000019
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
29165
29090
-
Thr
TGT
[ENA]
¡û
>W1511221222
JNFD01000042
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
35477
35402
-
Thr
TGT
[ENA]
¡û
>W1511357034
JRVC01000039
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
13134
13059
-
Thr
TGT
[ENA]
¡û
>W1511398351
JTDN01000001
Alphaproteobacteria
Croceibacterium mercuriale Coronado [JTDN]
1809647
1809572
-
Thr
TGT
[ENA]
¡û
>C161021391
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
3358756
3358831
+
Thr
TGT
[Ensembl]
¡û
>C161043680
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
832537
832462
-
Thr
TGT
[Ensembl]
¡û
>C161055655
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
3553575
3553650
+
Thr
TGT
-
¡û
>C161093693
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
1987550
1987475
-
Thr
TGT
[Ensembl]
¡û
>W121009702
AGFM01000038
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
26259
26184
-
Thr
TGT
[ENA]
¡û
>W121086748
AKKE01000175
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
44479
44404
-
Thr
TGT
[ENA]
¡û
>W121119253
ALVC01000431
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
11259
11184
-
Thr
TGT
[ENA]
¡û
>W1610077059
BCZF01000041
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
160358
160433
+
Thr
TGT
[ENA]
¡û
>C131011864
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
3857207
3857132
-
Thr
TGT
[Ensembl]
¡û
>W1610550579
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3657027
3657102
+
Thr
TGT
[ENA]
¡û
>W1610550581
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3545422
3545347
-
Thr
TGT
[ENA]
¡û
>W1610590974
LDRW01000008
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
176671
176596
-
Thr
TGT
[ENA]
¡û
>W1610649235
LJHV01000023
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
47027
47102
+
Thr
TGT
[ENA]
¡û
>W1610727338
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
727455
727530
+
Thr
TGT
[ENA]
¡û
>W1610728560
LMHH01000001
Alphaproteobacteria
Altererythrobacter sp. Root672 [LMHH]
1952914
1952989
+
Thr
TGT
[ENA]
¡û
>W1610729756
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
492645
492570
-
Thr
TGT
[ENA]
¡û
>W1610770866
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
172123
172198
+
Thr
TGT
[ENA]
¡û
>W1610770935
LNRS01000006
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
276725
276650
-
Thr
TGT
[ENA]
¡û
>W1610770990
LNRT01000020
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
35567
35492
-
Thr
TGT
[ENA]
¡û
>W1610771005
LNRU01000003
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
219531
219606
+
Thr
TGT
[ENA]
¡û
>W1610771078
LNRV01000028
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
29035
29110
+
Thr
TGT
[ENA]
¡û
>W1610771121
LNRW01000026
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
29039
29114
+
Thr
TGT
[ENA]
¡û
>W1610771165
LNRX01000026
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
35576
35501
-
Thr
TGT
[ENA]
¡û
>W1610771175
LNRY01000001
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
265284
265209
-
Thr
TGT
[ENA]
¡û
>W1610892824
LRSE01000004
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
140124
140049
-
Thr
TGT
[ENA]
¡û
>W1610912158
LSIA01000116
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
16050
15975
-
Thr
TGT
[ENA]
¡û
>W1611017825
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1854816
1854891
+
Thr
TGT
[ENA]
¡û
>W1611023696
LYWZ01000020
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
250467
250392
-
Thr
TGT
[ENA]
¡û
>W1710074748
BCZF01000041
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
160358
160433
+
Thr
TGT
[ENA]
¡û
>W1710507983
FMVR01000003
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
418535
418610
+
Thr
TGT
[ENA]
¡û
>W1710562075
FOOR01000009
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
138051
138126
+
Thr
TGT
[ENA]
¡û
>W1710593195
FRDF01000001
Alphaproteobacteria
Erythrobacter sanguineus [FRDF]
75572
75497
-
Thr
TGT
[ENA]
¡û
>W1710604586
FVZE01000005
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
6536
6461
-
Thr
TGT
[ENA]
¡û
>W1710605993
FWXL01000005
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
42303
42378
+
Thr
TGT
[ENA]
¡û
>W1710660342
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3657027
3657102
+
Thr
TGT
[ENA]
¡û
>W1710660344
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
3545422
3545347
-
Thr
TGT
[ENA]
¡û
>W1710710254
LDRW01000008
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
176671
176596
-
Thr
TGT
[ENA]
¡û
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Sequence ID
Genome ID
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(Sample source for ENV)
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Direction
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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