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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45737 (53 seq.)
>W1711283081
LZOF01000059
Spirochaetota
Brachyspira hampsonii [LZOF]
889
805
-
Leu
TAA
[ENA]
¡û
>W1711307483
MAOX01000009
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
694
610
-
Leu
TAA
[ENA]
¡û
>W1711307522
MAOY01000011
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
717
633
-
Leu
TAA
[ENA]
¡û
>W1711351566
MDCO01000012
Spirochaetota
Brachyspira hampsonii [MDCO]
881140
881224
+
Leu
TAA
[ENA]
¡û
>W1711507041
MKXF01000005
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
700
616
-
Leu
TAA
[ENA]
¡û
>W131093649
AOMM01000319
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
3557
3641
+
Leu
TAA
[ENA]
¡û
>W131182376
ARQI01000077
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
17727
17643
-
Leu
TAA
[ENA]
¡û
>W131184499
ARSY01000040
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
62832
62748
-
Leu
TAA
[ENA]
¡û
>WENV180116953
OARB01000363
[OARB] human gut metagenome; ENVO:feces
2005
2089
+
Leu
TAA
[ENA]
¢þ
>WENV180117075
OARC01012770
[OARC] human gut metagenome; ENVO:feces
268
184
-
Leu
TAA
[ENA]
¢þ
>WENV180117749
OARM01000045
[OARM] human gut metagenome; ENVO:feces
27748
27832
+
Leu
TAA
[ENA]
¢þ
>W141037631
ALNZ01000017
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
11776
11860
+
Leu
TAA
[ENA]
¡û
>WENV181704785
OGPK01000942
[OGPK] human gut metagenome; faeces
14232
14148
-
Leu
TAA
[ENA]
¢þ
>W141275742
JADF01000023
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
48320
48236
-
Leu
TAA
[ENA]
¡û
>WENV182964357
OKWR01001393
[OKWR] human gut metagenome; human gut
14192
14108
-
Leu
TAA
[ENA]
¢þ
>WENV183384934
OLYN01021508
[OLYN] human gut metagenome; feces
1399
1315
-
Leu
TAA
[ENA]
¢þ
>WENV183423773
OMBG01007533
[OMBG] human gut metagenome; feces
3194
3110
-
Leu
TAA
[ENA]
¢þ
>WENV183447521
OMCS01012156
[OMCS] human gut metagenome; feces
1320
1236
-
Leu
TAA
[ENA]
¢þ
>C181038077
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1342018
1341934
-
Leu
TAA
-
¡û
>C191016984
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
2214296
2214380
+
Leu
TAA
-
¡û
>W09108433
ABTG01000004
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
280619
280703
+
Leu
TAA
[ENA]
¡û
>W1920000281
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
1940088
1940004
-
Leu
TAA
[ENA]
¡û
>W1910000004
AFQM01000003
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
7285
7369
+
Leu
TAA
[ENA]
¡û
>W1910569137
JJMJ01000068
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
124854
124938
+
Leu
TAA
[ENA]
¡û
>W1910569206
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2735257
2735173
-
Leu
TAA
[ENA]
¡û
>C09102345
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1589096
1589012
-
Leu
TAA
[Ensembl]
¡û
>C10101946
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1810395
1810479
+
Leu
TAA
[Ensembl]
¡û
>C10101977
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1518500
1518584
+
Leu
TAA
[Ensembl]
¡û
>C11103103
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
522307
522391
+
Leu
TAA
[Ensembl]
¡û
>W1510641515
CVLB01000002
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
227493
227409
-
Leu
TAA
[ENA]
¡û
>W1511506957
JXNA01000077
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
181910
181826
-
Leu
TAA
[ENA]
¡û
>W1511506970
JXNB01000029
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
64718
64634
-
Leu
TAA
[ENA]
¡û
>W1511507013
JXNC01000037
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
15593
15677
+
Leu
TAA
[ENA]
¡û
>W1511507027
JXND01000014
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
726
642
-
Leu
TAA
[ENA]
¡û
>W1511507062
JXNE01000025
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
727
643
-
Leu
TAA
[ENA]
¡û
>W1511507104
JXNF01000045
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
754
670
-
Leu
TAA
[ENA]
¡û
>W1511507127
JXNG01000014
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
15602
15686
+
Leu
TAA
[ENA]
¡û
>W1511507165
JXNH01000050
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
17745
17661
-
Leu
TAA
[ENA]
¡û
>W1511507183
JXNI01000004
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
15583
15667
+
Leu
TAA
[ENA]
¡û
>W1511507221
JXNJ01000012
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
84906
84990
+
Leu
TAA
[ENA]
¡û
>W1511507262
JXNK01000028
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
64701
64617
-
Leu
TAA
[ENA]
¡û
>W1511507278
JXNL01000003
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
53111
53027
-
Leu
TAA
[ENA]
¡û
>W1511507323
JXNM01000025
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
78986
78902
-
Leu
TAA
[ENA]
¡û
>W1511507343
JXNN01000003
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
15629
15713
+
Leu
TAA
[ENA]
¡û
>W1511507388
JXNO01000029
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
2790
2874
+
Leu
TAA
[ENA]
¡û
>W1511507406
JXNP01000003
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
76135
76051
-
Leu
TAA
[ENA]
¡û
>W1511507468
JXNQ01000119
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
765
681
-
Leu
TAA
[ENA]
¡û
>W1511507475
JXNR01000003
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
15612
15696
+
Leu
TAA
[ENA]
¡û
>W1511507526
JXNS01000141
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
16692
16776
+
Leu
TAA
[ENA]
¡û
>C161092122
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2130829
2130913
+
Leu
TAA
[Ensembl]
¡û
>C131001499
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1708488
1708404
-
Leu
TAA
[Ensembl]
¡û
>C131003826
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2617865
2617781
-
Leu
TAA
[Ensembl]
¡û
>C131019645
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
212073
212157
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK