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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457377 (115 seq.)
>W1710853373
LLWP01000003
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
52118
52043
-
Met
CAT
[ENA]
¡û
>W1710995809
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
430795
430870
+
Met
CAT
[ENA]
¡û
>W1710995823
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
43156
43081
-
Met
CAT
[ENA]
¡û
>W1711354776
MDFN01000008
Bacteroidota
Arcticibacter eurypsychrophilus [MDFN]
142508
142433
-
Met
CAT
[ENA]
¡û
>W131145929
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
225777
225702
-
Met
CAT
[ENA]
¡û
>W131156265
AQPN01000052
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
8201
8126
-
Met
CAT
[ENA]
¡û
>W131156267
AQPN01000052
Bacteroidota
Arcticibacter svalbardensis MN12-7 [AQPN]
7915
7840
-
Met
CAT
[ENA]
¡û
>W131234989
AULF01000007
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
111395
111470
+
Met
CAT
[ENA]
¡û
>w027787
ABCM01000005
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
92791
92719
-
Met
CAT
[ENA]
¡û
>w027785
ABCM01000005
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
93022
92950
-
Met
CAT
[ENA]
¡û
>C171057614
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1775820
1775895
+
Met
CAT
-
¡û
>C171057616
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1776054
1776129
+
Met
CAT
-
¡û
>C171057618
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1776289
1776364
+
Met
CAT
-
¡û
>WENV180365318
OBOB01075692
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
186
112
-
fMet
CAT
[ENA]
¢þ
>W141142846
AWRU01000003
Bacteroidota
Pedobacter sp. V48 [AWRU]
44300
44375
+
Met
CAT
[ENA]
¡û
>WENV183065074
OLII01017454
[OLII] seawater metagenome; Sea water
1250
1324
+
fMet
CAT
[ENA]
¢þ
>WENV183729788
PJTR01000077
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
48115
48188
+
fMet
CAT
[ENA]
¢þ
>WENV183730929
PJTS01002194
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
4870
4797
-
fMet
CAT
[ENA]
¢þ
>WENV183731700
PJTT01000111
[PJTT] soil metagenome; Soil (2) enriched on wood chips
48115
48188
+
fMet
CAT
[ENA]
¢þ
>WENV183735368
PJUA01016880
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
14
87
+
fMet
CAT
[ENA]
¢þ
>WENV183736254
PJUC01000286
[PJUC] soil metagenome; Soil enriched on filter paper
9414
9487
+
fMet
CAT
[ENA]
¢þ
>WENV183736744
PJUD01000011
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
336421
336495
+
fMet
CAT
[ENA]
¢þ
>WENV183738506
PJUE01000007
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
508237
508311
+
fMet
CAT
[ENA]
¢þ
>WENV183740083
PJUF01000294
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4991
4917
-
fMet
CAT
[ENA]
¢þ
>WENV183740115
PJUF01000378
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
21712
21639
-
fMet
CAT
[ENA]
¢þ
>WENV183742527
PJUI01000007
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
808104
808179
+
fMet
CAT
[ENA]
¢þ
>WENV183743611
PJUJ01010278
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
731
806
+
fMet
CAT
[ENA]
¢þ
>WENV183745349
PJUL01032382
[PJUL] feces metagenome; Chicken feces enriched on filter paper
207
282
+
fMet
CAT
[ENA]
¢þ
>WENV170319570
CESQ01175946
[CESQ] marine metagenome genome assembly TARA_100_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
246
321
+
Met
CAT
[ENA]
¢þ
>WENV170369062
CETQ01137131
[CETQ] marine metagenome genome assembly TARA_110_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8878
8803
-
Met
CAT
[ENA]
¢þ
>WENV170921506
MDTG01015648
[MDTG] marine metagenome; seawater
45761
45836
+
Met
CAT
[ENA]
¢þ
>WENV170995720
MWWF01042628
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
177
104
-
Met
CAT
[ENA]
¢þ
>WENV170996492
MWWF01294454
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
366
291
-
Met
CAT
[ENA]
¢þ
>WENV170997451
MWWG01139993
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
120
45
-
Met
CAT
[ENA]
¢þ
>C181094366
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3904904
3904829
-
Met
CAT
-
¡û
>C181094368
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3904677
3904602
-
Met
CAT
-
¡û
>C181225952
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
639077
639150
+
Met
CAT
-
¡û
>C181225953
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
639208
639281
+
Met
CAT
-
¡û
>C191127450
CP034562
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
4766602
4766677
+
Met
CAT
-
¡û
>C191127467
CP034562
Bacteroidota
Flammeovirga pectinis L12M1 [CP034562, CP034563]
5114143
5114069
-
Met
CAT
-
¡û
>C191158032
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
1945826
1945899
+
Met
CAT
-
¡û
>C191221530
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
546342
546415
+
Met
CAT
-
¡û
>C191221531
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
546469
546542
+
Met
CAT
-
¡û
>C191226427
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
1797652
1797727
+
Met
CAT
-
¡û
>C191226445
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
4338442
4338516
+
Met
CAT
-
¡û
>W1911136194
NOUX01000001
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
632712
632639
-
Met
CAT
[ENA]
¡û
>W1911136247
NOUY01000002
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
316992
316919
-
Met
CAT
[ENA]
¡û
>C09108555
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4529950
4529875
-
Met
CAT
[Ensembl]
¡û
>W1911647410
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
221844
221769
-
Met
CAT
[ENA]
¡û
>W1911647412
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
221609
221534
-
Met
CAT
[ENA]
¡û
>W1810069016
PEAZ01000035
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
42013
42086
+
Met
CAT
[ENA]
¡û
>W1810069081
PEBA01000025
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
18834
18907
+
Met
CAT
[ENA]
¡û
>W1810069082
PEBA01000025
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
18961
19034
+
Met
CAT
[ENA]
¡û
>W1810265823
PQVF01000009
Bacteroidota
Solitalea longa HR-AV [PQVF]
105944
105868
-
Met
CAT
[ENA]
¡û
>W1810364512
PVTH01000003
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
104748
104674
-
Met
CAT
[ENA]
¡û
>W1810364514
PVTH01000003
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
104491
104416
-
Met
CAT
[ENA]
¡û
>W1810474629
QAIL01000095
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
19716
19642
-
Met
CAT
[ENA]
¡û
>W1810503917
QBKM01000005
Bacteroidota
Pedobacter sp. YR016 [QBKM]
40500
40425
-
Met
CAT
[ENA]
¡û
>W1810503919
QBKM01000005
Bacteroidota
Pedobacter sp. YR016 [QBKM]
40264
40189
-
Met
CAT
[ENA]
¡û
>W1810676167
QKLU01000009
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
202236
202162
-
Met
CAT
[ENA]
¡û
>W1810676169
QKLU01000009
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
202015
201941
-
Met
CAT
[ENA]
¡û
>W1810693872
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
105973
105899
-
Met
CAT
[ENA]
¡û
>W1810693874
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
105739
105665
-
Met
CAT
[ENA]
¡û
>W1810693876
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
104481
104407
-
Met
CAT
[ENA]
¡û
>W1810704329
QMHQ01000001
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
858917
858992
+
Met
CAT
[ENA]
¡û
>W1810704331
QMHQ01000001
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
859222
859297
+
Met
CAT
[ENA]
¡û
>W1511206114
JMTN01000012
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
60575
60500
-
Met
CAT
[ENA]
¡û
>C11117918
CP002545
Bacteroidota
Pseudopedobacter saltans DSM 12145 [CP002545]
3970834
3970759
-
Met
CAT
[Ensembl]
¡û
>W1511359624
JRYR01000020
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
109186
109261
+
Met
CAT
[ENA]
¡û
>W1511359627
JRYR01000026
Bacteroidota
Flammeovirga pacifica WPAGA1 [JRYR]
74420
74345
-
Met
CAT
[ENA]
¡û
>W1511393406
JTAM01000011
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
39482
39557
+
Met
CAT
[ENA]
¡û
>W1511393407
JTAM01000019
Bacteroidota
Flammeovirga sp. OC4 [JTAM]
92791
92866
+
Met
CAT
[ENA]
¡û
>W1511509413
JXRA01000026
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
228
153
-
Met
CAT
[ENA]
¡û
>W11140041
AEKX01000001
Bacteroidota
Pseudopedobacter saltans DSM 12145 [AEKX]
812768
812693
-
Met
CAT
[ENA]
¡û
>C121011518
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3759744
3759669
-
Met
CAT
[Ensembl]
¡û
>C161002949
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
4472542
4472467
-
Met
CAT
[Ensembl]
¡û
>C161002950
CP003560
Bacteroidota
Flammeovirga sp. MY04 [CP003560, CP003561]
3928160
3928085
-
Met
CAT
[Ensembl]
¡û
>C161073016
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5409755
5409830
+
Met
CAT
[Ensembl]
¡û
>C161073018
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5409993
5410068
+
Met
CAT
[Ensembl]
¡û
>C161073020
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5411254
5411329
+
Met
CAT
[Ensembl]
¡û
>W121017826
AGSC01000031
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
48903
48978
+
Met
CAT
[ENA]
¡û
>W1610612109
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6621
6696
+
Met
CAT
[ENA]
¡û
>W1610612111
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6853
6928
+
Met
CAT
[ENA]
¡û
>W1610716497
LLWP01000003
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
52118
52043
-
Met
CAT
[ENA]
¡û
>W1610850466
LQAQ01000093
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
430795
430870
+
Met
CAT
[ENA]
¡û
>W1610850480
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
43156
43081
-
Met
CAT
[ENA]
¡û
>WENV000755
AACY020024445
Marine microbial communities from Global Ocean Sampling (GOS)
1411
1486
+
Met
CAT
[ENA]
>W1710519692
FNEX01000017
Bacteroidota
Pedobacter sp. ok626 [FNEX]
9874
9799
-
Met
CAT
[ENA]
¡û
>W1710519694
FNEX01000017
Bacteroidota
Pedobacter sp. ok626 [FNEX]
9610
9535
-
Met
CAT
[ENA]
¡û
>W1710521474
FNGK01000015
Bacteroidota
Sphingobacterium mizutaii [FNGK]
41685
41610
-
Met
CAT
[ENA]
¡û
>W1710521475
FNGK01000015
Bacteroidota
Sphingobacterium mizutaii [FNGK]
41554
41479
-
Met
CAT
[ENA]
¡û
>W1710521478
FNGK01000017
Bacteroidota
Sphingobacterium mizutaii [FNGK]
84
9
-
Met
CAT
[ENA]
¡û
>W1710522087
FNGY01000005
Bacteroidota
Pedobacter steynii [FNGY]
340247
340322
+
Met
CAT
[ENA]
¡û
>W1710522089
FNGY01000005
Bacteroidota
Pedobacter steynii [FNGY]
340481
340556
+
Met
CAT
[ENA]
¡û
>W1710522146
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
50774
50699
-
Met
CAT
[ENA]
¡û
>W1710522148
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
50548
50473
-
Met
CAT
[ENA]
¡û
>W1710522150
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
31189
31114
-
Met
CAT
[ENA]
¡û
>W1710533301
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
87133
87208
+
Met
CAT
[ENA]
¡û
>W1710533303
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
87365
87440
+
Met
CAT
[ENA]
¡û
>W1710533305
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
87597
87672
+
Met
CAT
[ENA]
¡û
>W1710538678
FNUT01000001
Bacteroidota
Sphingobacterium lactis [FNUT]
158972
158897
-
Met
CAT
[ENA]
¡û
>W1710538679
FNUT01000001
Bacteroidota
Sphingobacterium lactis [FNUT]
158846
158773
-
Met
CAT
[ENA]
¡û
>W1710543717
FOAF01000020
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
11298
11373
+
Met
CAT
[ENA]
¡û
>W1710560865
FONS01000005
Bacteroidota
Pedobacter antarcticus [FONS]
326315
326390
+
Met
CAT
[ENA]
¡û
>W1710560867
FONS01000005
Bacteroidota
Pedobacter antarcticus [FONS]
326541
326616
+
Met
CAT
[ENA]
¡û
>W1710560869
FONS01000005
Bacteroidota
Pedobacter antarcticus [FONS]
345898
345973
+
Met
CAT
[ENA]
¡û
>W1710563357
FOPP01000008
Bacteroidota
Pedobacter insulae [FOPP]
236831
236906
+
Met
CAT
[ENA]
¡û
>W1710576379
FOZZ01000006
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
42786
42861
+
Met
CAT
[ENA]
¡û
>W1710576380
FOZZ01000006
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
42902
42977
+
Met
CAT
[ENA]
¡û
>W1710583266
FQUQ01000008
Bacteroidota
Pedobacter caeni [FQUQ]
246870
246795
-
Met
CAT
[ENA]
¡û
>W1710583268
FQUQ01000008
Bacteroidota
Pedobacter caeni [FQUQ]
246636
246561
-
Met
CAT
[ENA]
¡û
>W1710606348
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
3197723
3197648
-
Met
CAT
[ENA]
¡û
>W1710606776
FWYB01000003
Bacteroidota
Pedobacter nyackensis [FWYB]
203663
203738
+
Met
CAT
[ENA]
¡û
>W1710733615
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6621
6696
+
Met
CAT
[ENA]
¡û
>W1710733617
LGEL01000009
Bacteroidota
Pedobacter panaciterrae [LGEL]
6853
6928
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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