This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457442 (126 seq.)
>W1711326700
MBFW01000052
Gammaproteobacteria
Shewanella algae [MBFW]
1548
1623
+
Val
TAC
[ENA]
¡û
>W1711326701
MBFW01000053
Gammaproteobacteria
Shewanella algae [MBFW]
52830
52755
-
Val
TAC
[ENA]
¡û
>W1711934464
NAJR01000026
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
16413
16338
-
Val
TAC
[ENA]
¡û
>W1712080467
NGZL01000063
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
2633
2708
+
Val
TAC
[ENA]
¡û
>W1712080468
NGZL01000063
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
2734
2809
+
Val
TAC
[ENA]
¡û
>WENV013051
AACY020357431
Marine microbial communities from Global Ocean Sampling (GOS)
2115
2190
+
Val
TAC
[ENA]
>WENV013053
AACY020357431
Marine microbial communities from Global Ocean Sampling (GOS)
2334
2409
+
Val
TAC
[ENA]
>WENV013054
AACY020357431
Marine microbial communities from Global Ocean Sampling (GOS)
2435
2510
+
Val
TAC
[ENA]
>WENV013240
AACY020363770
Marine microbial communities from Global Ocean Sampling (GOS)
111197
111122
-
Val
TAC
[ENA]
>WENV013241
AACY020363770
Marine microbial communities from Global Ocean Sampling (GOS)
111298
111223
-
Val
TAC
[ENA]
>WENV013242
AACY020363770
Marine microbial communities from Global Ocean Sampling (GOS)
111399
111324
-
Val
TAC
[ENA]
>WENV013243
AACY020363770
Marine microbial communities from Global Ocean Sampling (GOS)
111516
111441
-
Val
TAC
[ENA]
>WENV013244
AACY020363770
Marine microbial communities from Global Ocean Sampling (GOS)
111624
111549
-
Val
TAC
[ENA]
>C019763
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
229488
229563
+
Val
TAC
[Ensembl]
¡û
>C019768
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
280666
280741
+
Val
TAC
[Ensembl]
¡û
>C019772
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
441211
441286
+
Val
TAC
[Ensembl]
¡û
>C019820
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3107427
3107352
-
Val
TAC
[Ensembl]
¡û
>C022291
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1643125
1643050
-
Val
TAC
[Ensembl]
¡û
>C022292
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1643017
1642942
-
Val
TAC
[Ensembl]
¡û
>C022293
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1642900
1642825
-
Val
TAC
[Ensembl]
¡û
>C022294
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1642799
1642724
-
Val
TAC
[Ensembl]
¡û
>C022295
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1642698
1642623
-
Val
TAC
[Ensembl]
¡û
>C022392
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1588200
1588125
-
Val
TAC
[Ensembl]
¡û
>C022393
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1588092
1588017
-
Val
TAC
[Ensembl]
¡û
>C022394
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1587975
1587900
-
Val
TAC
[Ensembl]
¡û
>C022395
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1587858
1587783
-
Val
TAC
[Ensembl]
¡û
>C022396
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1587757
1587682
-
Val
TAC
[Ensembl]
¡û
>C022495
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1659748
1659673
-
Val
TAC
[Ensembl]
¡û
>C022496
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1659640
1659565
-
Val
TAC
[Ensembl]
¡û
>C022497
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1659523
1659448
-
Val
TAC
[Ensembl]
¡û
>C022498
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1659422
1659347
-
Val
TAC
[Ensembl]
¡û
>C022499
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1659321
1659246
-
Val
TAC
[Ensembl]
¡û
>C022950
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3261842
3261917
+
Val
TAC
[Ensembl]
¡û
>C022952
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3262066
3262141
+
Val
TAC
[Ensembl]
¡û
>WENV180310883
OBJT01044253
[OBJT] soil metagenome; soil
76
151
+
Val
TAC
[ENA]
¢þ
>W141171217
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
161583
161508
-
Val
TAC
[ENA]
¡û
>W141171218
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
161475
161400
-
Val
TAC
[ENA]
¡û
>W141171219
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
161358
161283
-
Val
TAC
[ENA]
¡û
>W141171220
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
161257
161182
-
Val
TAC
[ENA]
¡û
>W141171221
AXZL01000066
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
161156
161081
-
Val
TAC
[ENA]
¡û
>W09102778
AAIN01000004
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
294736
294661
-
Val
TAC
[ENA]
¡û
>W09102842
AAIN01000060
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
5710
5635
-
Val
TAC
[ENA]
¡û
>W09102847
AAIN01000066
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
2724
2649
-
Val
TAC
[ENA]
¡û
>W09102850
AAIN01000067
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
2535
2460
-
Val
TAC
[ENA]
¡û
>W09104048
AALH01000030
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
54571
54496
-
Val
TAC
[ENA]
¡û
>W09104049
AALH01000030
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
54463
54388
-
Val
TAC
[ENA]
¡û
>W09104050
AALH01000030
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
54346
54271
-
Val
TAC
[ENA]
¡û
>W09104051
AALH01000030
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
54245
54170
-
Val
TAC
[ENA]
¡û
>W09104052
AALH01000030
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
54144
54069
-
Val
TAC
[ENA]
¡û
>W09104566
AALX01000003
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
186575
186500
-
Val
TAC
[ENA]
¡û
>W09104567
AALX01000003
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
186467
186392
-
Val
TAC
[ENA]
¡û
>W09104568
AALX01000003
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
186350
186275
-
Val
TAC
[ENA]
¡û
>W09104569
AALX01000003
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
186233
186158
-
Val
TAC
[ENA]
¡û
>W09104570
AALX01000003
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
186132
186057
-
Val
TAC
[ENA]
¡û
>C181057604
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
218902
218827
-
Val
TAC
-
¡û
>C181057606
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
218683
218608
-
Val
TAC
-
¡û
>C181057607
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
218582
218507
-
Val
TAC
-
¡û
>C181057608
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
218481
218406
-
Val
TAC
-
¡û
>C181062965
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3164418
3164493
+
Val
TAC
-
¡û
>C181062966
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3164526
3164601
+
Val
TAC
-
¡û
>C181062967
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3164643
3164718
+
Val
TAC
-
¡û
>C181062968
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3164745
3164820
+
Val
TAC
-
¡û
>C191015483
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
2094455
2094530
+
Val
TAC
-
¡û
>C191015490
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
2748084
2748159
+
Val
TAC
-
¡û
>C191015524
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4423052
4422977
-
Val
TAC
-
¡û
>C191015554
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
1550929
1550854
-
Val
TAC
-
¡û
>C191017601
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
4388547
4388622
+
Val
TAC
-
¡û
>C191017606
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
4439893
4439968
+
Val
TAC
-
¡û
>C191017610
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
4598114
4598189
+
Val
TAC
-
¡û
>C191017623
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2831333
2831258
-
Val
TAC
-
¡û
>W141520090
JGVI01000069
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
113087
113012
-
Val
TAC
[ENA]
¡û
>W141520092
JGVI01000069
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
112868
112793
-
Val
TAC
[ENA]
¡û
>W141520093
JGVI01000069
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
112767
112692
-
Val
TAC
[ENA]
¡û
>W141520094
JGVI01000069
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
112666
112591
-
Val
TAC
[ENA]
¡û
>C191107797
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
546428
546503
+
Val
TAC
-
¡û
>C191107802
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
724622
724697
+
Val
TAC
-
¡û
>C191107809
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
1460582
1460657
+
Val
TAC
-
¡û
>C191107867
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3178009
3177934
-
Val
TAC
-
¡û
>C191205274
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3858502
3858427
-
Val
TAC
-
¡û
>C191205275
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3858394
3858319
-
Val
TAC
-
¡û
>C191205276
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3858277
3858202
-
Val
TAC
-
¡û
>C191205277
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3858175
3858100
-
Val
TAC
-
¡û
>C191205278
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3858075
3858000
-
Val
TAC
-
¡û
>W1910645081
LVDH01000001
Gammaproteobacteria
Shewanella algae AC [LVDH]
1163633
1163558
-
Val
TAC
[ENA]
¡û
>W1910645248
LVDU01000002
Gammaproteobacteria
Shewanella algae YHL [LVDU]
920211
920136
-
Val
TAC
[ENA]
¡û
>W1910913770
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
205666
205591
-
Val
TAC
[ENA]
¡û
>W1910913771
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
205558
205483
-
Val
TAC
[ENA]
¡û
>W1910913772
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
205441
205366
-
Val
TAC
[ENA]
¡û
>W1910913773
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
205340
205265
-
Val
TAC
[ENA]
¡û
>W1910913774
NHRI01000006
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
205239
205164
-
Val
TAC
[ENA]
¡û
>W1910927205
NIJL01000036
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
2976
3051
+
Val
TAC
[ENA]
¡û
>W1810073382
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4479233
4479308
+
Val
TAC
[ENA]
¡û
>W1810073384
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4479452
4479527
+
Val
TAC
[ENA]
¡û
>W1810073385
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4479549
4479624
+
Val
TAC
[ENA]
¡û
>W1810073386
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
4479650
4479725
+
Val
TAC
[ENA]
¡û
>W1810585830
QFDC01000002
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
149
224
+
Val
TAC
[ENA]
¡û
>W1810587759
QFLG01000030
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
63641
63566
-
Val
TAC
[ENA]
¡û
>W1810587760
QFLG01000030
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
63540
63465
-
Val
TAC
[ENA]
¡û
>W1810671718
QJSY01000048
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
27028
26953
-
Val
TAC
[ENA]
¡û
>W1510077667
CDQH01000014
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
22
97
+
Val
TAC
[ENA]
¡û
>W1510077715
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
555866
555791
-
Val
TAC
[ENA]
¡û
>W1511306518
JPMA01000009
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
3997
4072
+
Val
TAC
[ENA]
¡û
>W1511306540
JPMA01000020
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
71468
71393
-
Val
TAC
[ENA]
¡û
>W1511403547
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2351386
2351311
-
Val
TAC
[ENA]
¡û
>W1511403548
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2351285
2351210
-
Val
TAC
[ENA]
¡û
>W1511403549
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2351168
2351093
-
Val
TAC
[ENA]
¡û
>W1511477975
JWGX01000098
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
60
135
+
Val
TAC
[ENA]
¡û
>W121103366
AKZL01000231
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
125
200
+
Val
TAC
[ENA]
¡û
>W121103367
AKZL01000231
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
226
301
+
Val
TAC
[ENA]
¡û
>WENV073791
AACY023937863
Marine microbial communities from Global Ocean Sampling (GOS)
754
829
+
Val
TAC
[ENA]
>W1610617854
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12238
12163
-
Val
TAC
[ENA]
¡û
>W1610617856
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12019
11944
-
Val
TAC
[ENA]
¡û
>W1610617857
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
11918
11843
-
Val
TAC
[ENA]
¡û
>W1710692513
JZWJ01000174
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
17928
17853
-
Val
TAC
[ENA]
¡û
>W1710692514
JZWJ01000174
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
17820
17745
-
Val
TAC
[ENA]
¡û
>W1710692515
JZWJ01000174
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
17704
17629
-
Val
TAC
[ENA]
¡û
>W1710692516
JZWJ01000174
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
17603
17528
-
Val
TAC
[ENA]
¡û
>W1710692517
JZWJ01000174
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
17502
17427
-
Val
TAC
[ENA]
¡û
>W1710706642
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
5034557
5034632
+
Val
TAC
[ENA]
¡û
>W1710706643
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
5034665
5034740
+
Val
TAC
[ENA]
¡û
>W1710706644
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
5034781
5034856
+
Val
TAC
[ENA]
¡û
>W1710706645
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
5034882
5034957
+
Val
TAC
[ENA]
¡û
>W1710706646
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
5034983
5035058
+
Val
TAC
[ENA]
¡û
>W1710744029
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12238
12163
-
Val
TAC
[ENA]
¡û
>W1710744031
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
12019
11944
-
Val
TAC
[ENA]
¡û
>W1710744032
LGYY01000136
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
11918
11843
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK