This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45746 (116 seq.)
>W1711055239
LRUN01000006
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
93463
93552
+
Ser
CGA
[ENA]
¡û
>W1711350782
MCRS01000087
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BAC [MCRS]
8527
8438
-
Ser
CGA
[ENA]
¡û
>W1711350828
MCRT01000089
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BDMA [MCRT]
8574
8485
-
Ser
CGA
[ENA]
¡û
>W1711350875
MCRU01000094
Gammaproteobacteria
Pseudomonas sp. BIOMIG1BD [MCRU]
6419
6330
-
Ser
CGA
[ENA]
¡û
>W1711350900
MCRV01000002
Gammaproteobacteria
Pseudomonas sp. BIOMIG1N [MCRV]
19045
19134
+
Ser
CGA
[ENA]
¡û
>W1711942174
NBAT01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis [NBAT]
94848
94759
-
Ser
CGA
[ENA]
¡û
>W1712004899
NEHE01000003
Gammaproteobacteria
Pseudomonas sp. R5(2017) [NEHE]
83632
83543
-
Ser
CGA
[ENA]
¡û
>W1712004980
NEHF01000017
Gammaproteobacteria
Pseudomonas sp. R4(2017) [NEHF]
90349
90260
-
Ser
CGA
[ENA]
¡û
>W1712005141
NEHI01000002
Gammaproteobacteria
Pseudomonas sp. R44(2017) [NEHI]
95736
95647
-
Ser
CGA
[ENA]
¡û
>W1712005975
NEHV01000019
Gammaproteobacteria
Pseudomonas sp. R29(2017) [NEHV]
66971
67060
+
Ser
CGA
[ENA]
¡û
>W1712006073
NEHX01000003
Gammaproteobacteria
Pseudomonas sp. R27(2017) [NEHX]
94236
94147
-
Ser
CGA
[ENA]
¡û
>W1712006107
NEHY01000001
Gammaproteobacteria
Pseudomonas sp. R26(2017) [NEHY]
269399
269488
+
Ser
CGA
[ENA]
¡û
>W1712006215
NEHZ01000018
Gammaproteobacteria
Pseudomonas sp. R25(2017) [NEHZ]
95081
94992
-
Ser
CGA
[ENA]
¡û
>W1712006418
NEID01000002
Gammaproteobacteria
Pseudomonas sp. R21(2017) [NEID]
359160
359249
+
Ser
CGA
[ENA]
¡û
>W1712006475
NEIE01000002
Gammaproteobacteria
Pseudomonas sp. R20(2017) [NEIE]
359329
359418
+
Ser
CGA
[ENA]
¡û
>W1712006541
NEIF01000003
Gammaproteobacteria
Pseudomonas sp. R19(2017) [NEIF]
359280
359369
+
Ser
CGA
[ENA]
¡û
>W1712006693
NEIH01000015
Gammaproteobacteria
Pseudomonas sp. R16(2017) [NEIH]
39491
39580
+
Ser
CGA
[ENA]
¡û
>W1712006851
NEIK01000003
Gammaproteobacteria
Pseudomonas sp. R12(2017) [NEIK]
94236
94147
-
Ser
CGA
[ENA]
¡û
>W1712007168
NEIP01000004
Gammaproteobacteria
Pseudomonas sp. B7(2017) [NEIP]
94995
94906
-
Ser
CGA
[ENA]
¡û
>W1712007219
NEIQ01000004
Gammaproteobacteria
Pseudomonas sp. B6(2017) [NEIQ]
254946
254857
-
Ser
CGA
[ENA]
¡û
>W1712007478
NEIU01000003
Gammaproteobacteria
Pseudomonas sp. B3(2017) [NEIU]
76449
76360
-
Ser
CGA
[ENA]
¡û
>W1712007782
NEIZ01000003
Gammaproteobacteria
Pseudomonas sp. B35(2017) [NEIZ]
371190
371279
+
Ser
CGA
[ENA]
¡û
>W1712008152
NEJF01000004
Gammaproteobacteria
Pseudomonas sp. B2(2017) [NEJF]
356266
356355
+
Ser
CGA
[ENA]
¡û
>W1712009152
NEJV01000003
Gammaproteobacteria
Pseudomonas sp. B11(2017) [NEJV]
391453
391542
+
Ser
CGA
[ENA]
¡û
>W131155173
AQOH01000084
Gammaproteobacteria
Pseudomonas fuscovaginae SE-1 [AQOH]
20043
19954
-
Ser
CGA
[ENA]
¡û
>W141076015
ATBG01000017
Gammaproteobacteria
Pseudomonas chlororaphis HT66 [ATBG]
58063
58152
+
Ser
CGA
[ENA]
¡û
>W141105789
AVOY01000164
Gammaproteobacteria
Pseudomonas piscis CMAA1215 [AVOY]
26317
26406
+
Ser
CGA
[ENA]
¡û
>W141146990
AWWJ01000015
Gammaproteobacteria
Pseudomonas chlororaphis YL-1 [AWWJ]
12575
12486
-
Ser
CGA
[ENA]
¡û
>W141195488
AYUD01000017
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca PB-St2 [AYUD]
199092
199181
+
Ser
CGA
[ENA]
¡û
>W141230669
BATG01000151
Gammaproteobacteria
Pseudomonas fuscovaginae ICMP 5940 [BATG]
27642
27553
-
Ser
CGA
[ENA]
¡û
>WENV170705726
LNAP01000153
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
68857
68768
-
Ser
CGA
[ENA]
¢þ
>WENV170784438
MCND01000020
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
9704
9615
-
Ser
CGA
[ENA]
¢þ
>WENV170784531
MCNE01000088
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
8530
8441
-
Ser
CGA
[ENA]
¢þ
>WENV170784624
MCNF01000119
[MCNF] bioreactor metagenome; arboretum soil enriched with benzalkonium chloride
8569
8480
-
Ser
CGA
[ENA]
¢þ
>WENV170784717
MCNG01000109
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
8569
8480
-
Ser
CGA
[ENA]
¢þ
>C181000233
AP014623
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca StFRB508 [AP014623]
1398782
1398871
+
Ser
CGA
-
¡û
>C181115826
CP025309
Gammaproteobacteria
Pseudomonas chlororaphis Lzh-T5 [CP025309]
1563621
1563710
+
Ser
CGA
-
¡û
>C181158132
CP027656
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ZJU60 [CP027656]
1567937
1568026
+
Ser
CGA
-
¡û
>C181183835
CP029693
Gammaproteobacteria
Pseudomonas putida JBC17 [CP029693]
5690469
5690558
+
Ser
CGA
-
¡û
>C191051779
CP027705
Gammaproteobacteria
Pseudomonas sp. CMR5c [CP027705]
1610078
1610167
+
Ser
CGA
-
¡û
>C191051849
CP027706
Gammaproteobacteria
Pseudomonas sessilinigenes CMR12a [CP027706]
1584837
1584926
+
Ser
CGA
-
¡û
>C191051917
CP027707
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DSM 21509 [CP027707]
1599379
1599468
+
Ser
CGA
-
¡û
>C191051982
CP027708
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17411 [CP027708]
1582677
1582766
+
Ser
CGA
-
¡û
>C191052047
CP027709
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ATCC 17809 [CP027709]
1582687
1582776
+
Ser
CGA
-
¡û
>C191052112
CP027710
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium SLPH10 [CP027710]
1596604
1596693
+
Ser
CGA
-
¡û
>C191052242
CP027712
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis DSM 50083 [CP027712]
1581497
1581586
+
Ser
CGA
-
¡û
>C191052307
CP027713
Gammaproteobacteria
Pseudomonas chlororaphis TAMOak81 [CP027713]
1593740
1593829
+
Ser
CGA
-
¡û
>C191052372
CP027714
Gammaproteobacteria
Pseudomonas chlororaphis ATCC 17415 [CP027714]
1575448
1575537
+
Ser
CGA
-
¡û
>C191052437
CP027715
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M12 [CP027715]
1565354
1565443
+
Ser
CGA
-
¡û
>C191052502
CP027716
Gammaproteobacteria
Pseudomonas chlororaphis Pb-St2 [CP027716]
1532344
1532433
+
Ser
CGA
-
¡û
>C191052567
CP027717
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca PCM 2210 [CP027717]
1589434
1589523
+
Ser
CGA
-
¡û
>C191052632
CP027718
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca Q16 [CP027718]
1576202
1576291
+
Ser
CGA
-
¡û
>C191052697
CP027719
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens P2 [CP027719]
1608259
1608348
+
Ser
CGA
-
¡û
>C191052762
CP027720
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens DSM 6698 [CP027720]
1594717
1594806
+
Ser
CGA
-
¡û
>C191052827
CP027721
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR36 [CP027721]
1625180
1625269
+
Ser
CGA
-
¡û
>C191052892
CP027722
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens C50 [CP027722]
1568431
1568520
+
Ser
CGA
-
¡û
>C191053764
CP027735
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium DTR133 [CP027735]
1633546
1633635
+
Ser
CGA
-
¡û
>C191053829
CP027736
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1391 [CP027736]
1576723
1576812
+
Ser
CGA
-
¡û
>C191053894
CP027737
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium PCL1607 [CP027737]
1635785
1635874
+
Ser
CGA
-
¡û
>C191053959
CP027738
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS135 [CP027738]
1599804
1599893
+
Ser
CGA
-
¡û
>C191054024
CP027739
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ToZa7 [CP027739]
1597965
1598054
+
Ser
CGA
-
¡û
>C191054089
CP027740
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium ChPhzS140 [CP027740]
1588567
1588656
+
Ser
CGA
-
¡û
>C191054154
CP027741
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 449 [CP027741]
1590547
1590636
+
Ser
CGA
-
¡û
>C191054219
CP027742
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca 464 [CP027742]
1592481
1592570
+
Ser
CGA
-
¡û
>C191054284
CP027743
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca CW2 [CP027743]
1579852
1579941
+
Ser
CGA
-
¡û
>C191054349
CP027744
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca M71 [CP027744]
1636825
1636914
+
Ser
CGA
-
¡û
>C191054414
CP027745
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca K27 [CP027745]
1619749
1619838
+
Ser
CGA
-
¡û
>C191054479
CP027746
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca DSM 19603 [CP027746]
1584211
1584300
+
Ser
CGA
-
¡û
>C191054544
CP027747
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens 66 [CP027747]
1601391
1601480
+
Ser
CGA
-
¡û
>C191054609
CP027748
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzS23 [CP027748]
1579783
1579872
+
Ser
CGA
-
¡û
>C191054674
CP027749
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR39 [CP027749]
1593589
1593678
+
Ser
CGA
-
¡û
>C191054739
CP027750
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzS24 [CP027750]
1588917
1589006
+
Ser
CGA
-
¡û
>C191054804
CP027751
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR18 [CP027751]
1578162
1578251
+
Ser
CGA
-
¡û
>C191054869
CP027752
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens ChPhzTR38 [CP027752]
1597665
1597754
+
Ser
CGA
-
¡û
>C191054934
CP027753
Gammaproteobacteria
Pseudomonas chlororaphis B25 [CP027753]
1741092
1741181
+
Ser
CGA
-
¡û
>C191207268
LR134334
Gammaproteobacteria
Pseudomonas chlororaphis NCTC7357 [LR134334]
5765084
5765173
+
Ser
CGA
-
¡û
>W1910211315
FMCZ01000001
Gammaproteobacteria
Pseudomonas chlororaphis [FMCZ]
1689357
1689268
-
Ser
CGA
[ENA]
¡û
>W1910635862
LNTS01000002
Gammaproteobacteria
Pseudomonas chlororaphis L19 [LNTS]
78131
78220
+
Ser
CGA
[ENA]
¡û
>W1910766262
MOAN01000104
Gammaproteobacteria
Pseudomonas chlororaphis 14B11 [MOAN]
343350
343261
-
Ser
CGA
[ENA]
¡û
>W1910766304
MOAO01000006
Gammaproteobacteria
Pseudomonas chlororaphis 48B8 [MOAO]
741806
741895
+
Ser
CGA
[ENA]
¡û
>W1910768246
MOBW01000039
Gammaproteobacteria
Pseudomonas chlororaphis 48G9 [MOBW]
356681
356770
+
Ser
CGA
[ENA]
¡û
>W1911492477
OBDX01000012
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I10 [OBDX]
184232
184321
+
Ser
CGA
[ENA]
¡û
>W1911680650
QJKE01000012
Gammaproteobacteria
Pseudomonas sp. LAMO17WK12:I9 [QJKE]
828
739
-
Ser
CGA
[ENA]
¡û
>W1810208694
POGE01000035
Gammaproteobacteria
Pseudomonas sp. FW306-2-2C-D06C [POGE]
39015
38926
-
Ser
CGA
[ENA]
¡û
>W1810208720
POGF01000011
Gammaproteobacteria
Pseudomonas sp. GW456-L14 [POGF]
156285
156196
-
Ser
CGA
[ENA]
¡û
>W1810208789
POGG01000012
Gammaproteobacteria
Pseudomonas sp. GW456-L12 [POGG]
126353
126264
-
Ser
CGA
[ENA]
¡û
>W1810208817
POGH01000007
Gammaproteobacteria
Pseudomonas sp. FW305-76 GW247-5R2A [POGH]
32489
32578
+
Ser
CGA
[ENA]
¡û
>W1810208883
POGI01000005
Gammaproteobacteria
Pseudomonas sp. FW126-L8 [POGI]
72210
72299
+
Ser
CGA
[ENA]
¡û
>W1810208939
POGJ01000009
Gammaproteobacteria
Pseudomonas sp. FW305-25 [POGJ]
32474
32563
+
Ser
CGA
[ENA]
¡û
>W1810239061
PPSC01000017
Gammaproteobacteria
Pseudomonas sp. FW507-12TSA [PPSC]
135199
135288
+
Ser
CGA
[ENA]
¡û
>W1810239146
PPSD01000032
Gammaproteobacteria
Pseudomonas sp. GW531-T4 [PPSD]
1067
978
-
Ser
CGA
[ENA]
¡û
>W1810624896
QHHP01000040
Gammaproteobacteria
Pseudomonas sp. RW409 [QHHP]
257627
257716
+
Ser
CGA
[ENA]
¡û
>W1810670629
QJRW01000016
Gammaproteobacteria
Pseudomonas chlororaphis LBs-160603 [QJRW]
85276
85365
+
Ser
CGA
[ENA]
¡û
>W1810692967
QLKZ01000001
Gammaproteobacteria
Pseudomonas chlororaphis HAMBI_1977 [QLKZ]
600099
600010
-
Ser
CGA
[ENA]
¡û
>C151035496
CP008696
Gammaproteobacteria
Pseudomonas chlororaphis PA23 [CP008696]
1468479
1468568
+
Ser
CGA
[Ensembl]
¡û
>C151048326
CP009290
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aurantiaca JD37 [CP009290]
5066682
5066593
-
Ser
CGA
[Ensembl]
¡û
>C151073853
CP010892
Gammaproteobacteria
Pseudomonas sp. MRSN 12121 MRSN12121 [CP010892]
1592613
1592702
+
Ser
CGA
[Ensembl]
¡û
>C151077081
CP011110
Gammaproteobacteria
Pseudomonas chlororaphis PCL1606 [CP011110]
5080980
5080891
-
Ser
CGA
[Ensembl]
¡û
>W1510014579
BBQB01000023
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521 [BBQB]
12698
12609
-
Ser
CGA
[ENA]
¡û
>C161078802
CP014867
Gammaproteobacteria
Pseudomonas chlororaphis [CP014867]
1261255
1261166
-
Ser
CGA
-
¡û
>W121023629
AHAY01000150
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis GP72 [AHAY]
3112
3023
-
Ser
CGA
[ENA]
¡û
>W121032054
AHHJ01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. aureofaciens 30-84 [AHHJ]
757878
757967
+
Ser
CGA
[ENA]
¡û
>W121038980
AHOT01000027
Gammaproteobacteria
Pseudomonas chlororaphis O6 [AHOT]
107875
107964
+
Ser
CGA
[ENA]
¡û
>W121086289
AKJU01000190
Gammaproteobacteria
Pseudomonas sp. GM17 [AKJU]
24420
24509
+
Ser
CGA
[ENA]
¡û
>W121104706
ALAQ01000010
Gammaproteobacteria
Pseudomonas fuscovaginae CB98818 [ALAQ]
72541
72630
+
Ser
CGA
[ENA]
¡û
>W1610541391
JSYZ01000019
Gammaproteobacteria
Pseudomonas fuscovaginae [JSYZ]
169411
169500
+
Ser
CGA
[ENA]
¡û
>W1610541453
JTBY01000217
Gammaproteobacteria
Pseudomonas fuscovaginae [JTBY]
16880
16969
+
Ser
CGA
[ENA]
¡û
>W1610607717
LFUT01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
755282
755371
+
Ser
CGA
[ENA]
¡û
>W1610896285
LRUN01000006
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
93463
93552
+
Ser
CGA
[ENA]
¡û
>W1710075669
BCZX01000006
Gammaproteobacteria
Pseudomonas chlororaphis subsp. chlororaphis NBRC 3904 [BCZX]
39703
39614
-
Ser
CGA
[ENA]
¡û
>W1710531849
FNPW01000003
Gammaproteobacteria
Pseudomonas sp. NFIX28 [FNPW]
87434
87345
-
Ser
CGA
[ENA]
¡û
>W1710543654
FOAE01000004
Gammaproteobacteria
Pseudomonas sp. NFACC41-3 [FOAE]
59019
58930
-
Ser
CGA
[ENA]
¡û
>W1710609012
FXBP01000001
Gammaproteobacteria
Pseudomonas sp. NFIX51 [FXBP]
735214
735303
+
Ser
CGA
[ENA]
¡û
>W1710644522
JSYZ01000019
Gammaproteobacteria
Pseudomonas fuscovaginae [JSYZ]
169411
169500
+
Ser
CGA
[ENA]
¡û
>W1710644584
JTBY01000217
Gammaproteobacteria
Pseudomonas fuscovaginae [JTBY]
16880
16969
+
Ser
CGA
[ENA]
¡û
>W1710729004
LFUT01000004
Gammaproteobacteria
Pseudomonas chlororaphis subsp. piscium [LFUT]
755282
755371
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK