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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457461 (126 seq.)
>W1710984112
LPSV01000136
Gammaproteobacteria
Shigella boydii [LPSV]
10107
10182
+
Asn
GTT
[ENA]
¡û
>W1710984220
LPSW01000101
Gammaproteobacteria
Shigella boydii [LPSW]
2290
2215
-
Asn
GTT
[ENA]
¡û
>W1710984591
LPTA01000241
Gammaproteobacteria
Shigella boydii [LPTA]
397
322
-
Asn
GTT
[ENA]
¡û
>W1710984672
LPTB01000175
Gammaproteobacteria
Shigella boydii [LPTB]
7070
6995
-
Asn
GTT
[ENA]
¡û
>W1710984755
LPTC01000424
Gammaproteobacteria
Shigella boydii [LPTC]
80
5
-
Asn
GTT
[ENA]
¡û
>W1710984911
LPTE01000172
Gammaproteobacteria
Shigella boydii [LPTE]
4550
4625
+
Asn
GTT
[ENA]
¡û
>W1710984994
LPTF01000309
Gammaproteobacteria
Shigella boydii [LPTF]
307
232
-
Asn
GTT
[ENA]
¡û
>W1710985232
LPTI01000170
Gammaproteobacteria
Shigella boydii [LPTI]
7071
6996
-
Asn
GTT
[ENA]
¡û
>W1710985401
LPTK01000168
Gammaproteobacteria
Shigella boydii [LPTK]
7801
7726
-
Asn
GTT
[ENA]
¡û
>W1710985484
LPTL01000152
Gammaproteobacteria
Shigella boydii [LPTL]
7070
6995
-
Asn
GTT
[ENA]
¡û
>W1711066166
LSCP01000157
Gammaproteobacteria
Shigella boydii [LSCP]
4549
4624
+
Asn
GTT
[ENA]
¡û
>W1711352501
MDDH01000039
Gammaproteobacteria
Shigella sp. FC1764 [MDDH]
7290
7215
-
Asn
GTT
[ENA]
¡û
>W1711352570
MDDI01000040
Gammaproteobacteria
Shigella sp. FC1882 [MDDI]
7288
7213
-
Asn
GTT
[ENA]
¡û
>W1711360247
MDJL01000049
Gammaproteobacteria
Shigella sp. FC2833 [MDJL]
7082
7007
-
Asn
GTT
[ENA]
¡û
>W1711430034
MIIV01000047
Gammaproteobacteria
Shigella sp. FC1567 [MIIV]
7342
7267
-
Asn
GTT
[ENA]
¡û
>W1711434850
MINP01000046
Gammaproteobacteria
Shigella sp. FC2117 [MINP]
7185
7110
-
Asn
GTT
[ENA]
¡û
>W1711434924
MINQ01000049
Gammaproteobacteria
Shigella sp. FC2125 [MINQ]
3853
3928
+
Asn
GTT
[ENA]
¡û
>W1711434990
MINR01000039
Gammaproteobacteria
Shigella sp. FC2175 [MINR]
7212
7137
-
Asn
GTT
[ENA]
¡û
>W1711435189
MINU01000040
Gammaproteobacteria
Shigella sp. FC2710 [MINU]
7305
7230
-
Asn
GTT
[ENA]
¡û
>W1711680236
MRWE01000009
Gammaproteobacteria
Rouxiella badensis [MRWE]
1597
1672
+
Asn
GTT
[ENA]
¡û
>W1711680237
MRWE01000009
Gammaproteobacteria
Rouxiella badensis [MRWE]
7856
7931
+
Asn
GTT
[ENA]
¡û
>W1711696415
MSJT02000283
Gammaproteobacteria
Shigella boydii [MSJT]
7050
6975
-
Asn
GTT
[ENA]
¡û
>W1711696980
MSKC02000078
Gammaproteobacteria
Shigella flexneri [MSKC]
10060
10135
+
Asn
GTT
[ENA]
¡û
>W1711697262
MSKG02000141
Gammaproteobacteria
Shigella flexneri [MSKG]
6410
6485
+
Asn
GTT
[ENA]
¡û
>W131052292
AMYV01000135
Gammaproteobacteria
gamma proteobacterium WG36 [AMYV]
10690
10615
-
Asn
GTT
[ENA]
¡û
>W131052293
AMYV01000135
Gammaproteobacteria
gamma proteobacterium WG36 [AMYV]
4496
4421
-
Asn
GTT
[ENA]
¡û
>W1711736401
MUAC01000107
Gammaproteobacteria
Escherichia coli [MUAC]
4211
4286
+
Asn
GTT
[ENA]
¡û
>W131186904
ARYB01000025
Gammaproteobacteria
Enterobacter cloacae MR2 [ARYB]
5121
5196
+
Asn
GTT
[ENA]
¡û
>W131219625
ATYS01000017
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
22810
22885
+
Asn
GTT
[ENA]
¡û
>W131238044
AUUA01000004
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
198819
198744
-
Asn
GTT
[ENA]
¡û
>W131244087
CAPL01000042
Gammaproteobacteria
Escherichia coli O5:K4(L):H4 str. ATCC 23502 [CAPL]
8026
8101
+
Asn
GTT
[ENA]
¡û
>W1711956092
NBTD01000001
Gammaproteobacteria
Yersinia enterocolitica [NBTD]
916440
916365
-
Asn
GTT
[ENA]
¡û
>W1711956101
NBTE01000002
Gammaproteobacteria
Yersinia enterocolitica [NBTE]
245858
245933
+
Asn
GTT
[ENA]
¡û
>W1711956215
NBTF01000006
Gammaproteobacteria
Yersinia enterocolitica [NBTF]
1211753
1211678
-
Asn
GTT
[ENA]
¡û
>W1712079231
NGWE01000088
Gammaproteobacteria
Shigella flexneri [NGWE]
10284
10359
+
Asn
GTT
[ENA]
¡û
>W1712079301
NGWF01000088
Gammaproteobacteria
Shigella flexneri [NGWF]
10381
10456
+
Asn
GTT
[ENA]
¡û
>C020793
CP000036
Gammaproteobacteria
Shigella boydii Sb227 [CP000036]
1215217
1215142
-
Asn
GTT
[Ensembl]
¡û
>C027384
AM286415
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica 8081 [AM286415]
2893538
2893613
+
Asn
GTT
[Ensembl]
¡û
>WENV180137074
OATO01000190
[OATO] human gut metagenome; faeces
15210
15135
-
Asn
GTT
[ENA]
¢þ
>W141024494
AKKR01000033
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica WA-314 [AKKR]
17659
17584
-
Asn
GTT
[ENA]
¡û
>W141043575
AMGB01000049
Gammaproteobacteria
Shigella flexneri 1485-80 [AMGB]
4912
4837
-
Asn
GTT
[ENA]
¡û
>W141127917
AWAT01000012
Gammaproteobacteria
Escherichia coli UMEA 3014-1 [AWAT]
366885
366960
+
Asn
GTT
[ENA]
¡û
>W141167772
AXUK01000030
Gammaproteobacteria
Escherichia coli 909945-2 [AXUK]
33699
33774
+
Asn
GTT
[ENA]
¡û
>WENV181764635
OGQY01000154
[OGQY] human gut metagenome; faeces
7879
7954
+
Asn
GTT
[ENA]
¢þ
>C181138795
CP026731
Gammaproteobacteria
Shigella boydii ATCC 8700 [CP026731]
3336628
3336553
-
Asn
GTT
-
¡û
>C181139820
CP026766
Gammaproteobacteria
Shigella boydii 59-248 [CP026766]
4494483
4494558
+
Asn
GTT
-
¡û
>C181141640
CP026811
Gammaproteobacteria
Shigella flexneri 64-5500 [CP026811]
1248345
1248270
-
Asn
GTT
-
¡û
>C181145502
CP027105
Gammaproteobacteria
Escherichia coli RM14721 [CP027105]
2825077
2825152
+
Asn
GTT
-
¡û
>C181149197
CP027312
Gammaproteobacteria
Escherichia coli 2013C-3181 [CP027312]
439618
439543
-
Asn
GTT
-
¡û
>C181175869
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1381504
1381429
-
Asn
GTT
-
¡û
>C181175870
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1375584
1375509
-
Asn
GTT
-
¡û
>C181215578
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1405751
1405676
-
Asn
GTT
-
¡û
>C181215579
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1402747
1402672
-
Asn
GTT
-
¡û
>C191130110
CP034721
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Bareilly RSE03 [CP034721]
1809981
1809906
-
Asn
GTT
-
¡û
>C191130350
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
1261774
1261849
+
Asn
GTT
-
¡û
>C191196882
LR134144
Gammaproteobacteria
Salmonella enterica subsp. enterica NCTC7404 [LR134144]
1826331
1826256
-
Asn
GTT
-
¡û
>C191214340
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
2553260
2553335
+
Asn
GTT
-
¡û
>C191221519
LR590469
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica NCTC12982 [LR590469]
469553
469478
-
Asn
GTT
-
¡û
>W141710658
JMPN01000009
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
198476
198401
-
Asn
GTT
[ENA]
¡û
>W141801175
JPDU01000003
Gammaproteobacteria
Yersinia enterocolitica [JPDU]
17805
17730
-
Asn
GTT
[ENA]
¡û
>W141801180
JPDV01000002
Gammaproteobacteria
Yersinia enterocolitica [JPDV]
429403
429328
-
Asn
GTT
[ENA]
¡û
>W1910017874
BDPY01000044
Gammaproteobacteria
Escherichia coli E1581 [BDPY]
27905
27980
+
Asn
GTT
[ENA]
¡û
>W1910121101
BGHF01000051
Gammaproteobacteria
Escherichia coli SI-NP024 [BGHF]
5538
5463
-
Asn
GTT
[ENA]
¡û
>W1910230313
FOLW01000005
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
245504
245429
-
Asn
GTT
[ENA]
¡û
>W1910986089
NKOJ01000096
Gammaproteobacteria
Escherichia coli MOD1-EC1706 [NKOJ]
12103
12028
-
Asn
GTT
[ENA]
¡û
>W1911028490
NLTG01000084
Gammaproteobacteria
Escherichia coli MOD1-EC5081 [NLTG]
10334
10409
+
Asn
GTT
[ENA]
¡û
>W1911028618
NLTI01000083
Gammaproteobacteria
Escherichia coli MOD1-EC5079 [NLTI]
10334
10409
+
Asn
GTT
[ENA]
¡û
>W1911028677
NLTJ01000086
Gammaproteobacteria
Escherichia coli MOD1-EC5078 [NLTJ]
10334
10409
+
Asn
GTT
[ENA]
¡û
>W1911078926
NMXT01000139
Gammaproteobacteria
Shigella boydii FC666 [NMXT]
7218
7143
-
Asn
GTT
[ENA]
¡û
>W1911225911
NRWF01000093
Gammaproteobacteria
Escherichia coli A429 [NRWF]
7968
8043
+
Asn
GTT
[ENA]
¡û
>W1911226317
NRWK01000104
Gammaproteobacteria
Escherichia coli A205 [NRWK]
5489
5414
-
Asn
GTT
[ENA]
¡û
>W1911227369
NRWX01000193
Gammaproteobacteria
Escherichia coli A98 [NRWX]
7968
8043
+
Asn
GTT
[ENA]
¡û
>W1911397966
NWMR01000025
Gammaproteobacteria
Yersinia enterocolitica IP39285 [NWMR]
8990
8915
-
Asn
GTT
[ENA]
¡û
>W1911410186
NWTM01000001
Gammaproteobacteria
Pectobacterium zantedeschiae 9M [NWTM]
1917587
1917662
+
Asn
GTT
[ENA]
¡û
>W1911573075
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
4498015
4498090
+
Asn
GTT
[ENA]
¡û
>W1911581167
PESL01000008
Gammaproteobacteria
Pectobacterium zantedeschiae 2M [PESL]
274472
274547
+
Asn
GTT
[ENA]
¡û
>W1911658901
QETE01000001
Gammaproteobacteria
Pectobacterium zantedeschiae PC2 [QETE]
1319481
1319406
-
Asn
GTT
[ENA]
¡û
>W1911757144
QWRU01000142
Gammaproteobacteria
Shigella boydii DMB SH112 [QWRU]
6938
6863
-
Asn
GTT
[ENA]
¡û
>W1911757310
QWRX01000136
Gammaproteobacteria
Shigella boydii DMB SH121 [QWRX]
4507
4582
+
Asn
GTT
[ENA]
¡û
>W1911757935
QWSI01000140
Gammaproteobacteria
Shigella boydii DMB SH136 [QWSI]
6938
6863
-
Asn
GTT
[ENA]
¡û
>W1911769315
QXHY01000085
Gammaproteobacteria
Shigella flexneri DMB SH20107 [QXHY]
10096
10171
+
Asn
GTT
[ENA]
¡û
>W1911769378
QXHZ01000087
Gammaproteobacteria
Shigella flexneri DMB SH20108 [QXHZ]
6938
6863
-
Asn
GTT
[ENA]
¡û
>W1911769433
QXIA01000082
Gammaproteobacteria
Shigella flexneri DMB SH20109 [QXIA]
6938
6863
-
Asn
GTT
[ENA]
¡û
>W1911769491
QXIB01000166
Gammaproteobacteria
Shigella flexneri DMB SH20134 [QXIB]
1800
1875
+
Asn
GTT
[ENA]
¡û
>W1810066670
PDYE01000084
Gammaproteobacteria
Shigella boydii FC1642 [PDYE]
10280
10355
+
Asn
GTT
[ENA]
¡û
>W1810276775
PSSU01000002
Gammaproteobacteria
Shigella boydii NCTC 9770 [PSSU]
2725098
2725173
+
Asn
GTT
[ENA]
¡û
>W1810404160
PYKO01000132
Gammaproteobacteria
Shigella sp. SHS-4 [PYKO]
7273
7198
-
Asn
GTT
[ENA]
¡û
>W1810423291
PYSO01000029
Gammaproteobacteria
Pectobacterium punjabense SS95 [PYSO]
133124
133049
-
Asn
GTT
[ENA]
¡û
>W1810750452
QOZD01000026
Gammaproteobacteria
Escherichia coli MOD1-ECOR71 [QOZD]
56000
55925
-
Asn
GTT
[ENA]
¡û
>C151050056
CP009367
Gammaproteobacteria
Yersinia enterocolitica WA [CP009367]
2144168
2144243
+
Asn
GTT
[Ensembl]
¡û
>C151051844
CP009460
Gammaproteobacteria
Dickeya fangzhongdai ND14b [CP009460]
890870
890945
+
Asn
GTT
[Ensembl]
¡û
>C151068490
CP010423
Gammaproteobacteria
Pragia fontium 24613 [CP010423]
2690543
2690618
+
Asn
GTT
[Ensembl]
¡û
>C151083635
CP011511
Gammaproteobacteria
Shigella boydii ATCC 9210 [CP011511]
1177207
1177282
+
Asn
GTT
[Ensembl]
¡û
>W1510139160
CGBA01000025
Gammaproteobacteria
Yersinia enterocolitica SZ375/04 [CGBA]
46928
47003
+
Asn
GTT
[ENA]
¡û
>W1510464688
CQCV01000024
Gammaproteobacteria
Yersinia enterocolitica WA [CQCV]
17796
17721
-
Asn
GTT
[ENA]
¡û
>W1510465404
CQDJ01000025
Gammaproteobacteria
Yersinia enterocolitica SC9312-78 [CQDJ]
39862
39937
+
Asn
GTT
[ENA]
¡û
>W1510668374
CWIY01000009
Gammaproteobacteria
Yersinia enterocolitica E701 [CWIY]
117175
117100
-
Asn
GTT
[ENA]
¡û
>W1510668482
CWIZ01000046
Gammaproteobacteria
Yersinia enterocolitica E736 [CWIZ]
39941
40016
+
Asn
GTT
[ENA]
¡û
>W1510668595
CWJB01000024
Gammaproteobacteria
Yersinia enterocolitica ST5081 [CWJB]
17723
17648
-
Asn
GTT
[ENA]
¡û
>W1510722295
CXXK01000005
Gammaproteobacteria
Escherichia coli [CXXK]
329576
329651
+
Asn
GTT
[ENA]
¡û
>W1510728790
CYAQ01000059
Gammaproteobacteria
Escherichia coli 503028_aEPEC [CYAQ]
9046
8971
-
Asn
GTT
[ENA]
¡û
>W1510738859
CYFU01000064
Gammaproteobacteria
Escherichia coli G603423 [CYFU]
5135
5060
-
Asn
GTT
[ENA]
¡û
>W1511358291
JRWY01000007
Gammaproteobacteria
Dickeya fangzhongdai M074 [JRWY]
127374
127449
+
Asn
GTT
[ENA]
¡û
>W1511389819
JSXC01000024
Gammaproteobacteria
Pectobacterium fontis M022 [JSXC]
144281
144206
-
Asn
GTT
[ENA]
¡û
>W1511488448
JWSL01000004
Gammaproteobacteria
Shigella flexneri CFSAN027317 [JWSL]
3980125
3980200
+
Asn
GTT
[ENA]
¡û
>W1511527878
JYHZ01000212
Gammaproteobacteria
Escherichia coli F2626 [JYHZ]
4471
4546
+
Asn
GTT
[ENA]
¡û
>W1511568940
LAJR01000322
Gammaproteobacteria
Shigella flexneri 6 BS1040 [LAJR]
6926
6851
-
Asn
GTT
[ENA]
¡û
>W11145369
AERO01000145
Gammaproteobacteria
Shigella flexneri CDC 796-83 [AERO]
15741
15816
+
Asn
GTT
[ENA]
¡û
>W1511629467
LDCJ01000059
Gammaproteobacteria
Enterobacter kobei GN02186 [LDCJ]
9338
9263
-
Asn
GTT
[ENA]
¡û
>W11161059
AFGC01000018
Gammaproteobacteria
Shigella boydii 3594-74 [AFGC]
34803
34728
-
Asn
GTT
[ENA]
¡û
>C161022391
CP009846
Gammaproteobacteria
Yersinia enterocolitica 8081 [CP009846]
2222975
2223050
+
Asn
GTT
[Ensembl]
¡û
>W121004141
AFJJ01000064
Gammaproteobacteria
Edwardsiella tarda DT [AFJJ]
52637
52712
+
Asn
GTT
[ENA]
¡û
>W121091378
AKMW01000049
Gammaproteobacteria
Shigella flexneri CCH060 [AKMW]
8130
8055
-
Asn
GTT
[ENA]
¡û
>W121091861
AKNB01000181
Gammaproteobacteria
Shigella boydii 4444-74 [AKNB]
12838
12763
-
Asn
GTT
[ENA]
¡û
>W121126244
BAGV01000019
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
220741
220816
+
Asn
GTT
[ENA]
¡û
>W121126245
BAGV01000019
Gammaproteobacteria
Enterobacteriaceae bacterium B14 [BAGV]
221800
221875
+
Asn
GTT
[ENA]
¡û
>W1610006987
AMJX01000046
Gammaproteobacteria
Shigella boydii S7334 [AMJX]
35930
35855
-
Asn
GTT
[ENA]
¡û
>W1610007162
AMJZ01000030
Gammaproteobacteria
Shigella boydii 08-0009 [AMJZ]
7302
7227
-
Asn
GTT
[ENA]
¡û
>W1610007343
AMKB01000049
Gammaproteobacteria
Shigella boydii 08-2671 [AMKB]
35929
35854
-
Asn
GTT
[ENA]
¡û
>W1610007808
AMKG01000023
Gammaproteobacteria
Shigella boydii 248-1B [AMKG]
61596
61521
-
Asn
GTT
[ENA]
¡û
>W1610077481
BCZM01000022
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica NBRC 105693 [BCZM]
48614
48689
+
Asn
GTT
[ENA]
¡û
>W1710006646
AMJX01000046
Gammaproteobacteria
Shigella boydii S7334 [AMJX]
35930
35855
-
Asn
GTT
[ENA]
¡û
>W1710006821
AMJZ01000030
Gammaproteobacteria
Shigella boydii 08-0009 [AMJZ]
7302
7227
-
Asn
GTT
[ENA]
¡û
>W1710007002
AMKB01000049
Gammaproteobacteria
Shigella boydii 08-2671 [AMKB]
35929
35854
-
Asn
GTT
[ENA]
¡û
>W1710007467
AMKG01000023
Gammaproteobacteria
Shigella boydii 248-1B [AMKG]
61596
61521
-
Asn
GTT
[ENA]
¡û
>W1710075119
BCZM01000022
Gammaproteobacteria
Yersinia enterocolitica subsp. enterocolitica NBRC 105693 [BCZM]
48614
48689
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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