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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45759 (85 seq.)
>W1711293863
LZYZ01000001
Bacillota
Clostridium saccharobutylicum [LZYZ]
1191485
1191396
-
Ser
GGA
[ENA]
¡û
>W1711293946
LZZA01000030
Bacillota
Clostridium saccharobutylicum [LZZA]
42707
42796
+
Ser
GGA
[ENA]
¡û
>W1711294017
LZZB01000044
Bacillota
Clostridium beijerinckii [LZZB]
40642
40730
+
Ser
GGA
[ENA]
¡û
>W1711294028
LZZC01000013
Bacillota
Clostridium beijerinckii [LZZC]
17568
17657
+
Ser
GGA
[ENA]
¡û
>W1711294119
LZZD01000041
Bacillota
Clostridium beijerinckii [LZZD]
1731
1642
-
Ser
GGA
[ENA]
¡û
>W1711294166
LZZE01000039
Bacillota
Clostridium beijerinckii [LZZE]
48662
48751
+
Ser
GGA
[ENA]
¡û
>W1711294245
LZZG01000042
Bacillota
Clostridium beijerinckii [LZZG]
41736
41825
+
Ser
GGA
[ENA]
¡û
>W1711294312
LZZI01000025
Bacillota
Clostridium beijerinckii [LZZI]
1190
1101
-
Ser
GGA
[ENA]
¡û
>W1711294397
LZZJ01000215
Bacillota
Clostridium beijerinckii [LZZJ]
18653
18564
-
Ser
GGA
[ENA]
¡û
>W1711294475
LZZK01000067
Bacillota
Clostridium beijerinckii [LZZK]
12826
12915
+
Ser
GGA
[ENA]
¡û
>W1711294497
LZZL01000023
Bacillota
Clostridium sp. BL-8 [LZZL]
74218
74307
+
Ser
GGA
[ENA]
¡û
>W1711294556
LZZM01000185
Bacillota
Clostridium puniceum [LZZM]
36813
36902
+
Ser
GGA
[ENA]
¡û
>W1711320466
MBAF01000037
Bacillota
Clostridium beijerinckii [MBAF]
46733
46822
+
Ser
GGA
[ENA]
¡û
>W131092186
AOIF01000163
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
40583
40672
+
Ser
GGA
[ENA]
¡û
>W131252533
CBML010000008
Bacillota
Clostridium chauvoei JF4335 [CBML]
16240
16151
-
Ser
GGA
[ENA]
¡û
>W1711794365
MWMH01000013
Bacillota
Clostridium beijerinckii [MWMH]
89666
89577
-
Ser
GGA
[ENA]
¡û
>W1711902843
MZGT01000005
Bacillota
Clostridium chromiireducens [MZGT]
72492
72403
-
Ser
GGA
[ENA]
¡û
>W1712096556
NHZR01000012
Bacillota
Clostridium diolis [NHZR]
51509
51598
+
Ser
GGA
[ENA]
¡û
>C171045636
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
4963323
4963234
-
Ser
GGA
-
¡û
>C171045695
CP016087
Bacillota
Clostridium saccharoperbutylacetonicum N1-504 [CP016087]
5995714
5995625
-
Ser
GGA
-
¡û
>C171045788
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
4963700
4963611
-
Ser
GGA
-
¡û
>C171045855
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
6002344
6002255
-
Ser
GGA
-
¡û
>C171045950
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
4807078
4806989
-
Ser
GGA
-
¡û
>C171046039
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
4963933
4963844
-
Ser
GGA
-
¡û
>C171131140
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2811009
2810920
-
Ser
GGA
-
¡û
>C005108
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
5886506
5886417
-
Ser
GGA
[Ensembl]
¡û
>w011494
AALO01000036
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
42471
42562
+
Ser
GGA
[ENA]
¡û
>WENV180124239
OASX01004419
[OASX] human gut metagenome; faeces
1787
1698
-
Ser
GGA
[ENA]
¢þ
>WENV180129251
OATC01000160
[OATC] human gut metagenome; faeces
15762
15673
-
Ser
GGA
[ENA]
¢þ
>WENV180140118
OATT01007149
[OATT] human gut metagenome; faeces
812
901
+
Ser
GGA
[ENA]
¢þ
>WENV180232347
OBCO01000317
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
7903
7814
-
Ser
GGA
[ENA]
¢þ
>WENV180233307
OBCP01000319
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
7903
7814
-
Ser
GGA
[ENA]
¢þ
>W141039517
ALXI01000010
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
40654
40743
+
Ser
GGA
[ENA]
¡û
>WENV180444374
OBWZ01002967
[OBWZ] human gut metagenome; faeces
1963
1874
-
Ser
GGA
[ENA]
¢þ
>WENV180504909
OCAO01000166
[OCAO] human gut metagenome; faeces
35547
35458
-
Ser
GGA
[ENA]
¢þ
>WENV180506670
OCAS01002575
[OCAS] human gut metagenome; faeces
5121
5210
+
Ser
GGA
[ENA]
¢þ
>WENV180569821
OCLR01000511
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
27412
27501
+
Ser
GGA
[ENA]
¢þ
>WENV180570664
OCLS01000367
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
41678
41767
+
Ser
GGA
[ENA]
¢þ
>WENV180571681
OCLT01000308
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
7903
7814
-
Ser
GGA
[ENA]
¢þ
>WENV180573923
OCLW01000313
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
7903
7814
-
Ser
GGA
[ENA]
¢þ
>WENV180639985
OCRL01000299
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
7903
7814
-
Ser
GGA
[ENA]
¢þ
>WENV180640950
OCRM01000343
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
2597
2508
-
Ser
GGA
[ENA]
¢þ
>W141083114
AUPH01000580
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
2189
2100
-
Ser
GGA
[ENA]
¡û
>WENV181005799
ODVZ01003239
[ODVZ] human metagenome; G_DNA_Posterior fornix
110
199
+
Ser
GGA
[ENA]
¢þ
>WENV181807790
OGSQ01000141
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
45920
46009
+
Ser
GGA
[ENA]
¢þ
>WENV181818908
OGTU01000199
[OGTU] human gut metagenome; fecal sample 6 from infant 4
15221
15132
-
Ser
GGA
[ENA]
¢þ
>W141200270
AYXR01000017
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
65698
65609
-
Ser
GGA
[ENA]
¡û
>WENV182613893
OJKA01028604
[OJKA] metagenome; faeces
380
291
-
Ser
GGA
[ENA]
¢þ
>WENV182617483
OJKD01014211
[OJKD] metagenome; faeces
177
266
+
Ser
GGA
[ENA]
¢þ
>WENV182622058
OJKJ01005303
[OJKJ] metagenome; faeces
2003
1914
-
Ser
GGA
[ENA]
¢þ
>WENV182823433
OKBT01005041
[OKBT] human gut metagenome; human gut
618
529
-
Ser
GGA
[ENA]
¢þ
>WENV182835021
OKFJ01000918
[OKFJ] human gut metagenome; human gut
149
238
+
Ser
GGA
[ENA]
¢þ
>WENV182839507
OKHE01001495
[OKHE] human gut metagenome; human gut
189
278
+
Ser
GGA
[ENA]
¢þ
>WENV182855822
OKNE01003318
[OKNE] human gut metagenome; human gut
806
717
-
Ser
GGA
[ENA]
¢þ
>WENV182865588
OKQK01001398
[OKQK] human gut metagenome; human gut
2018
2107
+
Ser
GGA
[ENA]
¢þ
>WENV183087301
OLJG01004785
[OLJG] human gut metagenome; human gut
34
123
+
Ser
GGA
[ENA]
¢þ
>C181031777
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2795814
2795725
-
Ser
GGA
-
¡û
>C181031993
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2808776
2808687
-
Ser
GGA
-
¡û
>C181203673
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
6253355
6253266
-
Ser
GGA
-
¡û
>C191012404
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2788997
2788908
-
Ser
GGA
-
¡û
>C191025666
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1618234
1618145
-
Ser
GGA
-
¡û
>C191051256
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2807259
2807170
-
Ser
GGA
-
¡û
>C191123853
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
401530
401441
-
Ser
GGA
-
¡û
>W1910004347
AUUU01000028
Bacillota
Clostridium sp. LS [AUUU]
86448
86359
-
Ser
GGA
[ENA]
¡û
>C141007642
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
4963931
4963842
-
Ser
GGA
[Ensembl]
¡û
>W1911766229
QXDJ01000009
Bacillota
Clostridium chromiireducens C1 [QXDJ]
99565
99476
-
Ser
GGA
[ENA]
¡û
>W1810052483
PDCI01000036
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
34163
34074
-
Ser
GGA
[ENA]
¡û
>W1810052582
PDCJ01000007
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
44373
44462
+
Ser
GGA
[ENA]
¡û
>W1810147474
PIQP01000009
Bacillota
Clostridium beijerinckii WB [PIQP]
85752
85663
-
Ser
GGA
[ENA]
¡û
>W1810250495
PQCR01000052
Bacillota
Clostridium sp. 2-1 [PQCR]
13120
13031
-
Ser
GGA
[ENA]
¡û
>W1810271489
PRKY01000063
Bacillota
Clostridium diolis WST [PRKY]
27080
27169
+
Ser
GGA
[ENA]
¡û
>C151012391
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
5884924
5884835
-
Ser
GGA
[Ensembl]
¡û
>C151088293
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
126579
126668
+
Ser
GGA
-
¡û
>W1510755251
CYSO01000012
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
65080
65169
+
Ser
GGA
[ENA]
¡û
>W11176320
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
40757
40668
-
Ser
GGA
[ENA]
¡û
>C161023500
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
6306527
6306438
-
Ser
GGA
[Ensembl]
¡û
>W121102352
AKWA01000052
Bacillota
Clostridium beijerinckii G117 [AKWA]
85752
85663
-
Ser
GGA
[ENA]
¡û
>W1610030597
AYXL01000036
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
35908
35997
+
Ser
GGA
[ENA]
¡û
>W1610112559
CZLD01000012
Bacillota
Clostridium neonatale [CZLD]
34093
34004
-
Ser
GGA
[ENA]
¡û
>C131012951
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
6334562
6334473
-
Ser
GGA
[Ensembl]
¡û
>W1610507715
FLTT01000002
Bacillota
Clostridium septicum [FLTT]
37063
36974
-
Ser
GGA
[ENA]
¡û
>W1611062489
MBAF01000037
Bacillota
Clostridium beijerinckii [MBAF]
46733
46822
+
Ser
GGA
[ENA]
¡û
>W1710027720
AYXL01000036
Bacillota
Clostridium saccharobutylicum DSM 13864 [AYXL]
35908
35997
+
Ser
GGA
[ENA]
¡û
>W1710115263
CZLD01000012
Bacillota
Clostridium neonatale [CZLD]
34093
34004
-
Ser
GGA
[ENA]
¡û
>W1710499933
FLTT01000002
Bacillota
Clostridium septicum [FLTT]
37063
36974
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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