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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457601 (45 seq.)
>W1710934453
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
329967
330042
+
Trp
CCA
[ENA]
¡û
>W1710934490
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
241787
241862
+
Trp
CCA
[ENA]
¡û
>W1711147338
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
43590
43665
+
Trp
CCA
[ENA]
¡û
>W1711149046
LVLD01000001
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
43590
43665
+
Trp
CCA
[ENA]
¡û
>W1711149083
LVLE01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
43590
43665
+
Trp
CCA
[ENA]
¡û
>W1711149119
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
73578
73653
+
Trp
CCA
[ENA]
¡û
>W1711149157
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
43590
43665
+
Trp
CCA
[ENA]
¡û
>W1711272415
LZFI01000001
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
82195
82270
+
Trp
CCA
[ENA]
¡û
>W1711282008
LZMQ01000004
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
19487
19412
-
Trp
CCA
[ENA]
¡û
>W1711282018
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
26821
26896
+
Trp
CCA
[ENA]
¡û
>W131220803
ATZV01000036
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
2311
2386
+
Trp
CCA
[ENA]
¡û
>W1711421610
MHZG01000013
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
15647
15572
-
Trp
CCA
[ENA]
¡û
>W1711625795
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
205600
205675
+
Trp
CCA
[ENA]
¡û
>W1711932792
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
405015
405090
+
Trp
CCA
[ENA]
¡û
>W1712077013
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
278565
278640
+
Trp
CCA
[ENA]
¡û
>W1712077060
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
630960
631035
+
Trp
CCA
[ENA]
¡û
>C171035102
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
83057
83132
+
Trp
CCA
-
¡û
>C171035141
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
83057
83132
+
Trp
CCA
-
¡û
>C171035179
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
43590
43665
+
Trp
CCA
-
¡û
>C017371
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
43590
43665
+
Trp
CCA
[Ensembl]
¡û
>WENV180591642
OCOV01064818
[OCOV] marine metagenome; ENVO:01000301
297
222
-
Trp
CCA
[ENA]
¢þ
>C08007609
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
40716
40791
+
Trp
CCA
[Ensembl]
¡û
>WENV170616254
FUWD012882640
[FUWD] metagenome; unknown
3125
3050
-
Trp
CCA
[ENA]
¢þ
>C181078368
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
34912
34987
+
Trp
CCA
-
¡û
>C181187673
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
39557
39632
+
Trp
CCA
-
¡û
>C181218920
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
1592392
1592467
+
Trp
CCA
-
¡û
>C181218952
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1686826
1686901
+
Trp
CCA
-
¡û
>C181218991
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
1533891
1533966
+
Trp
CCA
-
¡û
>C181219024
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1933197
1933122
-
Trp
CCA
-
¡û
>C181219050
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
685486
685561
+
Trp
CCA
-
¡û
>C181219096
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1557930
1558005
+
Trp
CCA
-
¡û
>C141003783
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
38598
38673
+
Trp
CCA
[Ensembl]
¡û
>W1911279055
NTGB01000001
Betaproteobacteria
Polynucleobacter rarus MT-CBb6A5 [NTGB]
2582998
2582923
-
Trp
CCA
[ENA]
¡û
>W1911490749
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
94284
94359
+
Trp
CCA
[ENA]
¡û
>W1810102005
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
334573
334498
-
Trp
CCA
[ENA]
¡û
>W1810699139
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
414183
414258
+
Trp
CCA
[ENA]
¡û
>W1810699177
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
276219
276294
+
Trp
CCA
[ENA]
¡û
>C151025637
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
39009
39084
+
Trp
CCA
[Ensembl]
¡û
>WENV032366
AACY021440295
Marine microbial communities from Global Ocean Sampling (GOS)
242
319
+
Trp
CCA
[ENA]
>C161092369
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
40595
40670
+
Trp
CCA
[Ensembl]
¡û
>WENV057390
AACY023293392
Marine microbial communities from Global Ocean Sampling (GOS)
1252
1175
-
Trp
CCA
[ENA]
>WENV058792
AACY023341912
Marine microbial communities from Global Ocean Sampling (GOS)
529
454
-
Trp
CCA
[ENA]
>W1610791984
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
329967
330042
+
Trp
CCA
[ENA]
¡û
>W1610792021
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
241787
241862
+
Trp
CCA
[ENA]
¡û
>W1710605907
FWXJ01000019
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
1789
1864
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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