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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457602 (54 seq.)
>W1710934454
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
407330
407405
+
Thr
TGT
[ENA]
¡û
>W1710934491
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
318539
318614
+
Thr
TGT
[ENA]
¡û
>W1711147339
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
123899
123974
+
Thr
TGT
[ENA]
¡û
>W1711149047
LVLD01000001
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
123903
123978
+
Thr
TGT
[ENA]
¡û
>W1711149084
LVLE01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
123902
123977
+
Thr
TGT
[ENA]
¡û
>W1711149120
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
153888
153963
+
Thr
TGT
[ENA]
¡û
>W1711149158
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
123902
123977
+
Thr
TGT
[ENA]
¡û
>W1711272445
LZFI01000015
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
15856
15931
+
Thr
TGT
[ENA]
¡û
>W1711281986
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
637597
637672
+
Thr
TGT
[ENA]
¡û
>W1711282019
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
107173
107248
+
Thr
TGT
[ENA]
¡û
>W1711421611
MHZG01000015
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
74932
75007
+
Thr
TGT
[ENA]
¡û
>W1711421612
MHZG01000015
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
64952
64877
-
Thr
TGT
[ENA]
¡û
>W1711625796
MPIY01000017
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
296103
296178
+
Thr
TGT
[ENA]
¡û
>W1711932793
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
484600
484675
+
Thr
TGT
[ENA]
¡û
>W1712077014
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
367077
367152
+
Thr
TGT
[ENA]
¡û
>W1712077015
NGUO01000002
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
359634
359559
-
Thr
TGT
[ENA]
¡û
>W1712077061
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
720127
720202
+
Thr
TGT
[ENA]
¡û
>C171035103
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
163093
163168
+
Thr
TGT
-
¡û
>C171035104
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
436140
436215
+
Thr
TGT
-
¡û
>C171035142
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
163093
163168
+
Thr
TGT
-
¡û
>C171035143
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
435668
435743
+
Thr
TGT
-
¡û
>C171035180
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
123496
123571
+
Thr
TGT
-
¡û
>W131220818
ATZV01000062
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
6756
6831
+
Thr
TGT
[ENA]
¡û
>C017372
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
123899
123974
+
Thr
TGT
[Ensembl]
¡û
>WENV180391154
OBPM01021200
[OBPM] marine metagenome; ENVO:00002010
377
302
-
Thr
TGT
[ENA]
¢þ
>WENV180393045
OBPP01060688
[OBPP] marine metagenome; ENVO:00002042
111
186
+
Thr
TGT
[ENA]
¢þ
>WENV180394211
OBPR01098062
[OBPR] marine metagenome; ENVO:00002042
215
290
+
Thr
TGT
[ENA]
¢þ
>WENV001869
AACY020053243
Marine microbial communities from Global Ocean Sampling (GOS)
477
402
-
Thr
TGT
[ENA]
>C08007610
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
122098
122173
+
Thr
TGT
[Ensembl]
¡û
>WENV170599950
FUWD010099646
[FUWD] metagenome; unknown
347
272
-
Thr
TGT
[ENA]
¢þ
>WENV170624192
FUWD013177321
[FUWD] metagenome; unknown
3044
2969
-
Thr
TGT
[ENA]
¢þ
>WENV170632475
FUWD013383101
[FUWD] metagenome; unknown
3044
2969
-
Thr
TGT
[ENA]
¢þ
>WENV170949589
MEHZ011434477
[MEHZ] marine metagenome; marine surface water
248
173
-
Thr
TGT
[ENA]
¢þ
>WENV170949591
MEHZ011434485
[MEHZ] marine metagenome; marine surface water
289
214
-
Thr
TGT
[ENA]
¢þ
>W09106296
AAUC01000010
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
56959
57034
+
Thr
TGT
[ENA]
¡û
>W09107520
ABJA01000002
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
45375
45300
-
Thr
TGT
[ENA]
¡û
>C181187674
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
118024
118099
+
Thr
TGT
-
¡û
>C181218861
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
8974
9049
+
Thr
TGT
-
¡û
>C181218934
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
67047
67122
+
Thr
TGT
-
¡û
>C181219025
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1853064
1852989
-
Thr
TGT
-
¡û
>C181219051
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
761185
761260
+
Thr
TGT
-
¡û
>C181219097
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
1636556
1636631
+
Thr
TGT
-
¡û
>C141003784
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
113227
113302
+
Thr
TGT
[Ensembl]
¡û
>WENV026100
AACY020940355
Marine microbial communities from Global Ocean Sampling (GOS)
571
646
+
Thr
TGT
[ENA]
>W1911490750
OANS01000003
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
173602
173677
+
Thr
TGT
[ENA]
¡û
>W1810102006
PGTX01000002
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
257539
257464
-
Thr
TGT
[ENA]
¡û
>W1810699140
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
492628
492703
+
Thr
TGT
[ENA]
¡û
>W1810699178
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
354608
354683
+
Thr
TGT
[ENA]
¡û
>C151025638
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
117236
117311
+
Thr
TGT
[Ensembl]
¡û
>WENV030984
AACY021328401
Marine microbial communities from Global Ocean Sampling (GOS)
554
629
+
Thr
TGT
[ENA]
>C161092370
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
122086
122161
+
Thr
TGT
[Ensembl]
¡û
>WENV058487
AACY023330785
Marine microbial communities from Global Ocean Sampling (GOS)
1006
1083
+
Thr
TGT
[ENA]
>W1610791985
LOJI01000001
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
407330
407405
+
Thr
TGT
[ENA]
¡û
>W1610792022
LOJJ01000001
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
318539
318614
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK