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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457603 (51 seq.)
>W1710934462
LOJI01000022
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
58626
58701
+
Gly
GCC
[ENA]
¡û
>W1710934519
LOJJ01000018
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
313827
313902
+
Gly
GCC
[ENA]
¡û
>W1711147340
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
407922
407997
+
Gly
GCC
[ENA]
¡û
>W1711149049
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
49958
50033
+
Gly
GCC
[ENA]
¡û
>W1711149086
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
81342
81417
+
Gly
GCC
[ENA]
¡û
>W1711149121
LVLF01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
462146
462221
+
Gly
GCC
[ENA]
¡û
>W1711149159
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
437149
437224
+
Gly
GCC
[ENA]
¡û
>W1711272437
LZFI01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
221629
221554
-
Gly
GCC
[ENA]
¡û
>W1711281987
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
918902
918977
+
Gly
GCC
[ENA]
¡û
>W1711282020
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
387163
387238
+
Gly
GCC
[ENA]
¡û
>W1711301906
MAIK01000104
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1299
1374
+
Gly
GCC
[ENA]
¡û
>W1711421585
MHZG01000001
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
189577
189502
-
Gly
GCC
[ENA]
¡û
>W1711625762
MPIY01000001
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
133709
133784
+
Gly
GCC
[ENA]
¡û
>W1711932797
NAIA01000002
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
196838
196913
+
Gly
GCC
[ENA]
¡û
>W1712077042
NGUO01000019
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
8268
8193
-
Gly
GCC
[ENA]
¡û
>W1712077045
NGUP01000001
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
107662
107737
+
Gly
GCC
[ENA]
¡û
>C171035105
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
526480
526555
+
Gly
GCC
-
¡û
>C171035144
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
526009
526084
+
Gly
GCC
-
¡û
>C171035181
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
420153
420228
+
Gly
GCC
-
¡û
>W131220816
ATZV01000061
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
83063
83138
+
Gly
GCC
[ENA]
¡û
>C017373
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
407922
407997
+
Gly
GCC
[Ensembl]
¡û
>WENV180391131
OBPM01016605
[OBPM] marine metagenome; ENVO:00002010
548
473
-
Gly
GCC
[ENA]
¢þ
>C08007611
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
378831
378906
+
Gly
GCC
[Ensembl]
¡û
>WENV170619738
FUWD013020327
[FUWD] metagenome; unknown
1173
1098
-
Gly
GCC
[ENA]
¢þ
>WENV170624445
FUWD013181810
[FUWD] metagenome; unknown
1043
968
-
Gly
GCC
[ENA]
¢þ
>WENV170624447
FUWD013181811
[FUWD] metagenome; unknown
208
133
-
Gly
GCC
[ENA]
¢þ
>WENV170627859
FUWD013238633
[FUWD] metagenome; unknown
1173
1098
-
Gly
GCC
[ENA]
¢þ
>WENV170632733
FUWD013386698
[FUWD] metagenome; unknown
1043
968
-
Gly
GCC
[ENA]
¢þ
>WENV170632735
FUWD013386699
[FUWD] metagenome; unknown
208
133
-
Gly
GCC
[ENA]
¢þ
>C181078394
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
1412426
1412351
-
Gly
GCC
-
¡û
>C181187684
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1146866
1146791
-
Gly
GCC
-
¡û
>C181218892
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
1260948
1260873
-
Gly
GCC
-
¡û
>C181218926
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
968963
968888
-
Gly
GCC
-
¡û
>C181219026
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1571415
1571340
-
Gly
GCC
-
¡û
>C181219079
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
96081
96156
+
Gly
GCC
-
¡û
>W09106288
AAUC01000005
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
4848
4773
-
Gly
GCC
[ENA]
¡û
>W09107506
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
1214718
1214643
-
Gly
GCC
[ENA]
¡û
>C141003808
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
1383666
1383591
-
Gly
GCC
[Ensembl]
¡û
>W1911490728
OANS01000001
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
504497
504572
+
Gly
GCC
[ENA]
¡û
>W1810101994
PGTX01000001
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
555218
555143
-
Gly
GCC
[ENA]
¡û
>W1810699166
QMCG01000003
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
115784
115709
-
Gly
GCC
[ENA]
¡û
>W1810699183
QMCH01000002
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
166629
166704
+
Gly
GCC
[ENA]
¡û
>C151025663
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1469567
1469492
-
Gly
GCC
[Ensembl]
¡û
>WENV042147
AACY022215032
Marine microbial communities from Global Ocean Sampling (GOS)
49
124
+
Gly
GCC
[ENA]
>C161092371
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
391003
391078
+
Gly
GCC
[Ensembl]
¡û
>WENV057576
AACY023299147
Marine microbial communities from Global Ocean Sampling (GOS)
1647
1722
+
Gly
GCC
[ENA]
>WENV057858
AACY023308898
Marine microbial communities from Global Ocean Sampling (GOS)
180
105
-
Gly
GCC
[ENA]
>WENV057971
AACY023313154
Marine microbial communities from Global Ocean Sampling (GOS)
209
134
-
Gly
GCC
[ENA]
>W1610791993
LOJI01000022
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
58626
58701
+
Gly
GCC
[ENA]
¡û
>W1610792050
LOJJ01000018
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
313827
313902
+
Gly
GCC
[ENA]
¡û
>W1611052746
MAIK01000104
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1299
1374
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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