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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457605 (27 seq.)
>W1710934466
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
100249
100324
+
Val
TAC
[ENA]
¡û
>W1711147349
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
936306
936381
+
Val
TAC
[ENA]
¡û
>W1711149058
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
599914
599989
+
Val
TAC
[ENA]
¡û
>W1711149094
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
634135
634210
+
Val
TAC
[ENA]
¡û
>W1711149131
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
373830
373905
+
Val
TAC
[ENA]
¡û
>W1711149168
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1061487
1061562
+
Val
TAC
[ENA]
¡û
>W1711272422
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
352517
352592
+
Val
TAC
[ENA]
¡û
>W1711281982
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
470933
471008
+
Val
TAC
[ENA]
¡û
>W1711282035
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
493435
493510
+
Val
TAC
[ENA]
¡û
>W1711301916
MAIK01000418
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1214
1289
+
Val
TAC
[ENA]
¡û
>W1711932803
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
785114
785189
+
Val
TAC
[ENA]
¡û
>C171035113
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1080017
1080092
+
Val
TAC
-
¡û
>C171035152
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1098850
1098925
+
Val
TAC
-
¡û
>C171035190
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1026908
1026983
+
Val
TAC
-
¡û
>C017382
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
936306
936381
+
Val
TAC
[Ensembl]
¡û
>WENV180391245
OBPM01056456
[OBPM] marine metagenome; ENVO:00002010
219
294
+
Val
TAC
[ENA]
¢þ
>C08007634
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
778461
778389
-
Val
TAC
[Ensembl]
¡û
>W09106277
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
65314
65389
+
Val
TAC
[ENA]
¡û
>W09107501
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
815087
815162
+
Val
TAC
[ENA]
¡û
>C181218981
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
661328
661403
+
Val
TAC
-
¡û
>C181219032
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1026390
1026315
-
Val
TAC
-
¡û
>C181219058
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
1500465
1500540
+
Val
TAC
-
¡û
>C181219085
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
585739
585814
+
Val
TAC
-
¡û
>WENV047201
AACY022645979
Marine microbial communities from Global Ocean Sampling (GOS)
158
233
+
Val
TAC
[ENA]
>C161092396
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1017180
1017105
-
Val
TAC
[Ensembl]
¡û
>W1610791997
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
100249
100324
+
Val
TAC
[ENA]
¡û
>W1611052756
MAIK01000418
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1214
1289
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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