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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457608 (45 seq.)
>W1710934471
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
273485
273410
-
His
GTG
[ENA]
¡û
>W1710934517
LOJJ01000008
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
98517
98592
+
His
GTG
[ENA]
¡û
>W1711147367
LVJO01000026
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
110350
110275
-
His
GTG
[ENA]
¡û
>W1711149070
LVLD01000016
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
87636
87561
-
His
GTG
[ENA]
¡û
>W1711149106
LVLE01000014
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
75803
75728
-
His
GTG
[ENA]
¡û
>W1711149149
LVLF01000013
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
75663
75588
-
His
GTG
[ENA]
¡û
>W1711149181
LVLG01000006
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
69399
69324
-
His
GTG
[ENA]
¡û
>W1711272439
LZFI01000006
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
67932
68007
+
His
GTG
[ENA]
¡û
>W1711281992
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1243184
1243259
+
His
GTG
[ENA]
¡û
>W1711282025
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
711456
711531
+
His
GTG
[ENA]
¡û
>W1711301914
MAIK01000395
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1320
1395
+
His
GTG
[ENA]
¡û
>W1711421588
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
130708
130783
+
His
GTG
[ENA]
¡û
>W1711625783
MPIY01000007
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
134914
134839
-
His
GTG
[ENA]
¡û
>W1711932809
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
1069150
1069075
-
His
GTG
[ENA]
¡û
>W1712077044
NGUO01000023
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
21524
21599
+
His
GTG
[ENA]
¡û
>W1712077069
NGUP01000004
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
69355
69280
-
His
GTG
[ENA]
¡û
>C171035124
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1369224
1369149
-
His
GTG
-
¡û
>C171035162
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1388145
1388070
-
His
GTG
-
¡û
>C171035200
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1340529
1340454
-
His
GTG
-
¡û
>C017391
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1235296
1235221
-
His
GTG
[Ensembl]
¡û
>WENV180391142
OBPM01018879
[OBPM] marine metagenome; ENVO:00002010
216
141
-
His
GTG
[ENA]
¢þ
>C08007613
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
641998
642073
+
His
GTG
[Ensembl]
¡û
>WENV170598892
FUWD010053738
[FUWD] metagenome; unknown
214
289
+
His
GTG
[ENA]
¢þ
>WENV170619780
FUWD013021137
[FUWD] metagenome; unknown
2675
2600
-
His
GTG
[ENA]
¢þ
>WENV170627899
FUWD013239380
[FUWD] metagenome; unknown
2675
2600
-
His
GTG
[ENA]
¢þ
>C181187686
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
1089830
1089755
-
His
GTG
-
¡û
>C181218864
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
516823
516898
+
His
GTG
-
¡û
>C181218899
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
263278
263353
+
His
GTG
-
¡û
>C181218958
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
978380
978305
-
His
GTG
-
¡û
>C181219013
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
784970
785045
+
His
GTG
-
¡û
>C181219104
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
815705
815630
-
His
GTG
-
¡û
>W09106268
AAUC01000001
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
110979
110904
-
His
GTG
[ENA]
¡û
>W09107508
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
951550
951475
-
His
GTG
[ENA]
¡û
>C141003787
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
605778
605853
+
His
GTG
[Ensembl]
¡û
>W1911490756
OANS01000004
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
239457
239532
+
His
GTG
[ENA]
¡û
>W1810102018
PGTX01000006
Betaproteobacteria
Polynucleobacter brandtiae UB-Domo-W1 [PGTX]
38076
38001
-
His
GTG
[ENA]
¡û
>W1810699168
QMCG01000003
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
58742
58667
-
His
GTG
[ENA]
¡û
>W1810699185
QMCH01000002
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
223660
223735
+
His
GTG
[ENA]
¡û
>C151025641
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
656323
656398
+
His
GTG
[Ensembl]
¡û
>C161092389
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1264028
1263953
-
His
GTG
[Ensembl]
¡û
>WENV057962
AACY023312897
Marine microbial communities from Global Ocean Sampling (GOS)
1013
936
-
His
GTG
[ENA]
>WENV058178
AACY023320204
Marine microbial communities from Global Ocean Sampling (GOS)
620
697
+
His
GTG
[ENA]
>W1610792002
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
273485
273410
-
His
GTG
[ENA]
¡û
>W1610792048
LOJJ01000008
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
98517
98592
+
His
GTG
[ENA]
¡û
>W1611052754
MAIK01000395
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
1320
1395
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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