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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45762 (41 seq.)
>W1710863704
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1626725
1626638
-
Ser
TGA
[ENA]
¡û
>W1710864900
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1549173
1549260
+
Ser
TGA
[ENA]
¡û
>W1710867739
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
261604
261689
+
Ser
TGA
[ENA]
¡û
>W1710867823
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
693599
693684
+
Ser
TGA
[ENA]
¡û
>W1710868014
LMIT01000010
Actinomycetota
Nocardioides sp. Root240 [LMIT]
785086
785171
+
Ser
TGA
[ENA]
¡û
>W1710878773
LMRF01000005
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
191529
191616
+
Ser
TGA
[ENA]
¡û
>W1710880867
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
15781
15868
+
Ser
TGA
[ENA]
¡û
>W1710880950
LMSR01000019
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
165063
165150
+
Ser
TGA
[ENA]
¡û
>W131229408
AUGU01000009
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
130931
130846
-
Ser
TGA
[ENA]
¡û
>C015222
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
196614
196527
-
Ser
TGA
[Ensembl]
¡û
>WENV180000096
CZKB01000027
[CZKB] metagenome; liquid mineral medium
33202
33117
-
Ser
TGA
[ENA]
¢þ
>WENV180691721
OCZS010195453
[OCZS] soil metagenome; soil
97
182
+
Ser
TGA
[ENA]
¢þ
>C191159474
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
1392060
1391973
-
Ser
TGA
-
¡û
>C191186686
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3285172
3285259
+
Ser
TGA
-
¡û
>C191186987
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
2728707
2728794
+
Ser
TGA
-
¡û
>W1911798444
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
1292480
1292394
-
Ser
TGA
[ENA]
¡û
>W1911823580
QZVR01000019
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
108066
107979
-
Ser
TGA
[ENA]
¡û
>W1810157310
PJBV01000033
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
45041
44954
-
Ser
TGA
[ENA]
¡û
>W1810201600
POAG01000024
Actinomycetota
Nocardioides sp. 616 [POAG]
130914
130827
-
Ser
TGA
[ENA]
¡û
>W1810427496
PYXZ01000001
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
865052
864965
-
Ser
TGA
[ENA]
¡û
>W1810503994
QBKO01000004
Actinomycetota
Nocardioides sp. CF167 [QBKO]
291034
290949
-
Ser
TGA
[ENA]
¡û
>W1810626223
QHKY01000002
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
731128
731213
+
Ser
TGA
[ENA]
¡û
>W1810626289
QHKZ01000005
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
184214
184127
-
Ser
TGA
[ENA]
¡û
>W11125271
ADVI01000011
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
17816
17729
-
Ser
TGA
[ENA]
¡û
>W1511540070
JZDQ01000249
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
1638
1725
+
Ser
TGA
[ENA]
¡û
>C161082891
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1463166
1463079
-
Ser
TGA
[Ensembl]
¡û
>W1610050542
BBFY01001842
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
161
248
+
Ser
TGA
[ENA]
¡û
>W1610068469
BCRJ01000007
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
19197
19110
-
Ser
TGA
[ENA]
¡û
>W1610726050
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1626725
1626638
-
Ser
TGA
[ENA]
¡û
>W1610727246
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1549173
1549260
+
Ser
TGA
[ENA]
¡û
>W1610730085
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
261604
261689
+
Ser
TGA
[ENA]
¡û
>W1610730169
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
693599
693684
+
Ser
TGA
[ENA]
¡û
>W1610730360
LMIT01000010
Actinomycetota
Nocardioides sp. Root240 [LMIT]
785086
785171
+
Ser
TGA
[ENA]
¡û
>W1610741119
LMRF01000005
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
191529
191616
+
Ser
TGA
[ENA]
¡û
>W1610743213
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
15781
15868
+
Ser
TGA
[ENA]
¡û
>W1610743296
LMSR01000019
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
165063
165150
+
Ser
TGA
[ENA]
¡û
>W1710046941
BBFY01001842
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
161
248
+
Ser
TGA
[ENA]
¡û
>W1710065842
BCRJ01000007
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
19197
19110
-
Ser
TGA
[ENA]
¡û
>W1710083313
BDJG01000014
Actinomycetota
Nocardioides sp. PD653 [BDJG]
10830
10743
-
Ser
TGA
[ENA]
¡û
>W1710534276
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1732305
1732390
+
Ser
TGA
[ENA]
¡û
>W1710556309
FOKC01000017
Actinomycetota
Nocardioides alpinus [FOKC]
33955
34042
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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