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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457624 (62 seq.)
>W1710825536
LLDN01000107
Gammaproteobacteria
Acinetobacter pittii [LLDN]
186866
186793
-
Arg
CCT
[ENA]
¡û
>W1710827215
LLEZ01000046
Gammaproteobacteria
Acinetobacter soli [LLEZ]
50820
50746
-
Arg
CCT
[ENA]
¡û
>W1710829404
LLGF01000002
Gammaproteobacteria
Acinetobacter pittii [LLGF]
47220
47147
-
Arg
CCT
[ENA]
¡û
>W1710833570
LLIO01000183
Gammaproteobacteria
Acinetobacter pittii [LLIO]
4998
5071
+
Arg
CCT
[ENA]
¡û
>W1711064268
LSAK01000005
Gammaproteobacteria
Acinetobacter pittii [LSAK]
85220
85293
+
Arg
CCT
[ENA]
¡û
>W1711089066
LSZI01000002
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
50086
50161
+
Arg
CCT
[ENA]
¡û
>W1711089166
LSZJ01000011
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
316040
316115
+
Arg
CCT
[ENA]
¡û
>W1711116274
LUAW01000031
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
11834
11759
-
Arg
CCT
[ENA]
¡û
>W1711358011
MDHS01000037
Gammaproteobacteria
Acinetobacter pittii [MDHS]
2200
2127
-
Arg
CCT
[ENA]
¡û
>W1711359030
MDIL01000045
Gammaproteobacteria
Acinetobacter pittii [MDIL]
48743
48816
+
Arg
CCT
[ENA]
¡û
>W1711702415
MSOC01000001
Gammaproteobacteria
Acinetobacter pittii [MSOC]
50067
50140
+
Arg
CCT
[ENA]
¡û
>W1711946506
NBNP01000404
Gammaproteobacteria
Acinetobacter soli baylyi [NBNP]
23534
23460
-
Arg
CCT
[ENA]
¡û
>W1712058893
NGDK01000049
Gammaproteobacteria
Acinetobacter pittii [NGDK]
57213
57140
-
Arg
CCT
[ENA]
¡û
>W1712060257
NGEJ01000094
Gammaproteobacteria
Acinetobacter pittii [NGEJ]
82665
82738
+
Arg
CCT
[ENA]
¡û
>W1712063444
NGGW01000017
Gammaproteobacteria
Acinetobacter pittii [NGGW]
89462
89535
+
Arg
CCT
[ENA]
¡û
>W1712065778
NGIO01000031
Gammaproteobacteria
Acinetobacter pittii [NGIO]
182322
182249
-
Arg
CCT
[ENA]
¡û
>W1712065966
NGIS01000034
Gammaproteobacteria
Acinetobacter pittii [NGIS]
51088
51161
+
Arg
CCT
[ENA]
¡û
>W1712066501
NGJC01000023
Gammaproteobacteria
Acinetobacter pittii [NGJC]
50082
50155
+
Arg
CCT
[ENA]
¡û
>W131039119
AMHC01000031
Gammaproteobacteria
Acinetobacter baumannii AB_1583-8 [AMHC]
11698
11623
-
Arg
CCT
[ENA]
¡û
>W131041431
AMIS01000086
Gammaproteobacteria
Acinetobacter baumannii AB_TG27343 [AMIS]
11909
11834
-
Arg
CCT
[ENA]
¡û
>W131041824
AMIY01000027
Gammaproteobacteria
Acinetobacter calcoaceticus TG19593 [AMIY]
197387
197312
-
Arg
CCT
[ENA]
¡û
>W131042694
AMJN01000008
Gammaproteobacteria
Acinetobacter sp. TG2027 [AMJN]
84395
84468
+
Arg
CCT
[ENA]
¡û
>W131051115
AMXH01000056
Gammaproteobacteria
Acinetobacter pittii subsp. anitratus XM1570 [AMXH]
25308
25381
+
Arg
CCT
[ENA]
¡û
>W131112605
APOE01000002
Gammaproteobacteria
Acinetobacter calcoaceticus NIPH 13 [APOE]
251968
251895
-
Arg
CCT
[ENA]
¡û
>W131115504
APPU01000016
Gammaproteobacteria
Acinetobacter soli CIP 110264 [APPU]
92377
92452
+
Arg
CCT
[ENA]
¡û
>W131116135
APQD01000019
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [APQD]
44159
44234
+
Arg
CCT
[ENA]
¡û
>W131116373
APQH01000001
Gammaproteobacteria
Acinetobacter calcoaceticus ANC 3680 [APQH]
201966
201891
-
Arg
CCT
[ENA]
¡û
>W131169083
AREL01000008
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [AREL]
109992
110067
+
Arg
CCT
[ENA]
¡û
>C171053123
CP016896
Gammaproteobacteria
Acinetobacter soli GFJ2 [CP016896]
47484
47412
-
Arg
CCT
-
¡û
>C171102578
CP020000
Gammaproteobacteria
Acinetobacter calcoaceticus CA16 [CP020000]
3310609
3310684
+
Arg
CCT
-
¡û
>C171118865
CP021428
Gammaproteobacteria
Acinetobacter pittii HUMV-6483 [CP021428]
577462
577535
+
Arg
CCT
-
¡û
>WENV181841324
OGVR01009125
[OGVR] freshwater metagenome; freshwater
779
854
+
Arg
CCT
[ENA]
¢þ
>W141288765
JAPY01000002
Gammaproteobacteria
Acinetobacter soli TCM341 [JAPY]
115593
115667
+
Arg
CCT
[ENA]
¡û
>W141440966
JEWG01000001
Gammaproteobacteria
Acinetobacter sp. 1295259 1295259 [JEWG]
158429
158356
-
Arg
CCT
[ENA]
¡û
>W141443618
JEXG01000009
Gammaproteobacteria
Acinetobacter sp. 809848 809848 [JEXG]
44254
44181
-
Arg
CCT
[ENA]
¡û
>W141444855
JEXS01000004
Gammaproteobacteria
Acinetobacter sp. 907131 907131 [JEXS]
82576
82649
+
Arg
CCT
[ENA]
¡û
>WENV170965216
MTET01004734
[MTET] soil metagenome; garden soil control
3147
3074
-
Arg
CCT
[ENA]
¢þ
>W141483008
JFXZ01000009
Gammaproteobacteria
Acinetobacter sp. 883425 883425 [JFXZ]
42448
42375
-
Arg
CCT
[ENA]
¡û
>W141483335
JFYC01000012
Gammaproteobacteria
Acinetobacter sp. 742879 742879 [JFYC]
79511
79584
+
Arg
CCT
[ENA]
¡û
>C181167127
CP028574
Gammaproteobacteria
Acinetobacter pittii WCHAP005046 [CP028574]
481158
481085
-
Arg
CCT
-
¡û
>C191023516
CP023020
Gammaproteobacteria
Acinetobacter baumannii 9201 [CP023020]
1992957
1993030
+
Arg
CCT
-
¡û
>W1910753940
MKHP01000149
Gammaproteobacteria
Acinetobacter pittii YMC2009/2/B2968 [MKHP]
3680
3753
+
Arg
CCT
[ENA]
¡û
>W1810044019
BHGE01000026
Gammaproteobacteria
Acinetobacter soli OCU_Ac8 [BHGE]
95401
95475
+
Arg
CCT
[ENA]
¡û
>W1810044079
BHGF01000024
Gammaproteobacteria
Acinetobacter soli OCU_Ac9 [BHGF]
655
580
-
Arg
CCT
[ENA]
¡û
>W1510012683
BBNM01000009
Gammaproteobacteria
Acinetobacter soli KCTC 22184 [BBNM]
53225
53150
-
Arg
CCT
[ENA]
¡û
>W1510017893
BBTR01000014
Gammaproteobacteria
Acinetobacter pittii NBRC 110508 [BBTR]
4307
4234
-
Arg
CCT
[ENA]
¡û
>W1510018180
BBTX01000003
Gammaproteobacteria
Acinetobacter pittii NBRC 110505 [BBTX]
47906
47979
+
Arg
CCT
[ENA]
¡û
>W1510018261
BBTY01000014
Gammaproteobacteria
Acinetobacter pittii NBRC 110506 [BBTY]
47910
47983
+
Arg
CCT
[ENA]
¡û
>W1511347920
JRKA01000042
Gammaproteobacteria
Acinetobacter sp. ZOR0008 [JRKA]
43120
43047
-
Arg
CCT
[ENA]
¡û
>W1511463408
JVOR01000105
Gammaproteobacteria
Acinetobacter sp. 243_ASPC [JVOR]
52363
52288
-
Arg
CCT
[ENA]
¡û
>W1511642658
LDWD01000017
Gammaproteobacteria
Acinetobacter sp. C15 [LDWD]
55124
55199
+
Arg
CCT
[ENA]
¡û
>C161075289
CP014651
Gammaproteobacteria
Acinetobacter sp. DUT-2 [CP014651]
710877
710804
-
Arg
CCT
-
¡û
>C161086443
CP015364
Gammaproteobacteria
Acinetobacter baumannii 3207 [CP015364]
1590689
1590764
+
Arg
CCT
-
¡û
>W1610060999
BCMB01000016
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
71140
71215
+
Arg
CCT
[ENA]
¡û
>W1610688812
LLDN01000107
Gammaproteobacteria
Acinetobacter pittii [LLDN]
186866
186793
-
Arg
CCT
[ENA]
¡û
>W1610690492
LLEZ01000046
Gammaproteobacteria
Acinetobacter soli [LLEZ]
50820
50746
-
Arg
CCT
[ENA]
¡û
>W1610692681
LLGF01000002
Gammaproteobacteria
Acinetobacter pittii [LLGF]
47220
47147
-
Arg
CCT
[ENA]
¡û
>W1610696847
LLIO01000183
Gammaproteobacteria
Acinetobacter pittii [LLIO]
4998
5071
+
Arg
CCT
[ENA]
¡û
>W1610923444
LSZI01000002
Gammaproteobacteria
Acinetobacter sp. SFA [LSZI]
50086
50161
+
Arg
CCT
[ENA]
¡û
>W1610923544
LSZJ01000011
Gammaproteobacteria
Acinetobacter sp. SFD [LSZJ]
316040
316115
+
Arg
CCT
[ENA]
¡û
>W1610927516
LUAW01000031
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
11834
11759
-
Arg
CCT
[ENA]
¡û
>W1710058295
BCMB01000016
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
71140
71215
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK