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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.457643 (77 seq.)
>W1711178316
LWGP01000009
Gammaproteobacteria
Acinetobacter radioresistens [LWGP]
902
977
+
Trp
CCA
[ENA]
¡û
>W1711333360
MBPQ02000001
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
359057
358982
-
Trp
CCA
[ENA]
¡û
>W1711678923
MRUS01000013
Gammaproteobacteria
Acinetobacter indicus [MRUS]
207
282
+
Trp
CCA
[ENA]
¡û
>W1711679018
MRUT01000043
Gammaproteobacteria
Acinetobacter indicus [MRUT]
207
282
+
Trp
CCA
[ENA]
¡û
>W1712018234
NEXW01000014
Gammaproteobacteria
Acinetobacter indicus [NEXW]
89944
89869
-
Trp
CCA
[ENA]
¡û
>W131042449
AMJJ01000003
Gammaproteobacteria
Acinetobacter radioresistens TG02010 [AMJJ]
85110
85185
+
Trp
CCA
[ENA]
¡û
>W131114385
APPE01000041
Gammaproteobacteria
Acinetobacter variabilis NIPH 899 [APPE]
207784
207859
+
Trp
CCA
[ENA]
¡û
>W131116188
APQE01000005
Gammaproteobacteria
Acinetobacter radioresistens NIPH 2130 [APQE]
122259
122184
-
Trp
CCA
[ENA]
¡û
>W131116227
APQF01000007
Gammaproteobacteria
Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 [APQF]
84887
84962
+
Trp
CCA
[ENA]
¡û
>W131118473
APRK01000015
Gammaproteobacteria
Acinetobacter sp. CIP 53.82 [APRK]
261276
261351
+
Trp
CCA
[ENA]
¡û
>W131118974
APRS01000002
Gammaproteobacteria
Acinetobacter variabilis NIPH 2171 [APRS]
221862
221787
-
Trp
CCA
[ENA]
¡û
>W131206897
ATGH01000022
Gammaproteobacteria
Acinetobacter indicus ANC 4215 [ATGH]
116483
116408
-
Trp
CCA
[ENA]
¡û
>W141177387
AYET01000006
Gammaproteobacteria
Acinetobacter indicus CIP 110367 [AYET]
238122
238047
-
Trp
CCA
[ENA]
¡û
>WENV182561270
OJDV01026930
[OJDV] seawater metagenome; Sea water
327
402
+
Trp
CCA
[ENA]
¢þ
>WENV170399699
CEUE01036912
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1816
1741
-
Trp
CCA
[ENA]
¢þ
>WENV170536482
CEWP01188499
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
84
9
-
Trp
CCA
[ENA]
¢þ
>W141439997
JEVW01000058
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
16107
16032
-
Trp
CCA
[ENA]
¡û
>W141441890
JEWP01000017
Gammaproteobacteria
Acinetobacter sp. 1461402 1461402 [JEWP]
1257
1332
+
Trp
CCA
[ENA]
¡û
>W141442651
JEWW01000017
Gammaproteobacteria
Acinetobacter sp. 230853 230853 [JEWW]
53437
53362
-
Trp
CCA
[ENA]
¡û
>W141442748
JEWX01000058
Gammaproteobacteria
Acinetobacter sp. 272263 272263 [JEWX]
438
513
+
Trp
CCA
[ENA]
¡û
>W141443769
JEXH01000065
Gammaproteobacteria
Acinetobacter sp. 869535 869535 [JEXH]
995
1070
+
Trp
CCA
[ENA]
¡û
>W141444522
JEXO01000044
Gammaproteobacteria
Acinetobacter sp. 983759 983759 [JEXO]
6822
6747
-
Trp
CCA
[ENA]
¡û
>W141445559
JEXZ01000018
Gammaproteobacteria
Acinetobacter sp. 1239920 1239920 [JEXZ]
52577
52502
-
Trp
CCA
[ENA]
¡û
>W141452632
JFCC01000056
Gammaproteobacteria
Acinetobacter sp. 1294596 1294596 [JFCC]
15247
15172
-
Trp
CCA
[ENA]
¡û
>WENV170871336
MDTB01204186
[MDTB] marine metagenome; seawater
727
652
-
Trp
CCA
[ENA]
¢þ
>WENV170944177
MDTG01409558
[MDTG] marine metagenome; seawater
1480
1555
+
Trp
CCA
[ENA]
¢þ
>W09135526
ACVR01000054
Gammaproteobacteria
Acinetobacter radioresistens SK82 [ACVR]
53
128
+
Trp
CCA
[ENA]
¡û
>C181103244
CP024620
Gammaproteobacteria
Acinetobacter indicus SGAir0564 [CP024620]
2869139
2869064
-
Trp
CCA
-
¡û
>C181133777
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 [CP026420]
2710995
2710920
-
Trp
CCA
-
¡û
>C181150882
CP027365
Gammaproteobacteria
Acinetobacter radioresistens DSSKY-A-001 [CP027365]
217782
217857
+
Trp
CCA
-
¡û
>C181187169
CP030031
Gammaproteobacteria
Acinetobacter radioresistens LH6 [CP030031]
212438
212513
+
Trp
CCA
-
¡û
>C191087136
CP032279
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 [CP032279]
2191298
2191373
+
Trp
CCA
-
¡û
>C191157219
CP038022
Gammaproteobacteria
Acinetobacter radioresistens DD78 [CP038022]
217722
217797
+
Trp
CCA
-
¡û
>W141564840
JIBB01000007
Gammaproteobacteria
Acinetobacter sp. UNC436CL71CviS28 [JIBB]
84967
85042
+
Trp
CCA
[ENA]
¡û
>W141705447
JMNM01000004
Gammaproteobacteria
Acinetobacter sp. 263903-1 263903-1 [JMNM]
64267
64342
+
Trp
CCA
[ENA]
¡û
>W1910010478
BDII01000195
Gammaproteobacteria
Escherichia coli O26 NIID082383 [BDII]
1471
1546
+
Trp
CCA
[ENA]
¡û
>W1910758232
MLJU01000021
Gammaproteobacteria
Acinetobacter radioresistens Dog_1A_IMI [MLJU]
52603
52528
-
Trp
CCA
[ENA]
¡û
>W1911812230
QZDR01000003
Gammaproteobacteria
Acinetobacter radioresistens B62 [QZDR]
322
397
+
Trp
CCA
[ENA]
¡û
>W1810149278
PISK01000028
Gammaproteobacteria
Acinetobacter radioresistens 50v1 [PISK]
102201
102126
-
Trp
CCA
[ENA]
¡û
>W1810225635
POVU01000011
Gammaproteobacteria
Acinetobacter sp. MB5 [POVU]
79215
79140
-
Trp
CCA
[ENA]
¡û
>W1810269012
PRDX01000026
Gammaproteobacteria
Acinetobacter indicus IHIT31215 [PRDX]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810269053
PRDY01000009
Gammaproteobacteria
Acinetobacter indicus IHIT31216 [PRDY]
88535
88460
-
Trp
CCA
[ENA]
¡û
>W1810269168
PRDZ01000040
Gammaproteobacteria
Acinetobacter indicus IHIT31218 [PRDZ]
222
297
+
Trp
CCA
[ENA]
¡û
>W1810269189
PREA01000006
Gammaproteobacteria
Acinetobacter indicus IHIT31220 [PREA]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810269292
PREB01000014
Gammaproteobacteria
Acinetobacter indicus IHIT31223 [PREB]
237
312
+
Trp
CCA
[ENA]
¡û
>W1810269390
PREC01000037
Gammaproteobacteria
Acinetobacter indicus IHIT31224 [PREC]
369
444
+
Trp
CCA
[ENA]
¡û
>W1810269395
PRED01000002
Gammaproteobacteria
Acinetobacter indicus IHIT31225 [PRED]
120687
120612
-
Trp
CCA
[ENA]
¡û
>W1810269524
PREE01000043
Gammaproteobacteria
Acinetobacter indicus IHIT31227 [PREE]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810269586
PREF01000014
Gammaproteobacteria
Acinetobacter indicus IHIT31228 [PREF]
74135
74060
-
Trp
CCA
[ENA]
¡û
>W1810269638
PREG01000007
Gammaproteobacteria
Acinetobacter indicus IHIT31229 [PREG]
197
272
+
Trp
CCA
[ENA]
¡û
>W1810269713
PREH01000011
Gammaproteobacteria
Acinetobacter indicus IHIT31230 [PREH]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810269779
PREI01000011
Gammaproteobacteria
Acinetobacter indicus IHIT31231 [PREI]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810269859
PREJ01000010
Gammaproteobacteria
Acinetobacter indicus IHIT31232 [PREJ]
197
272
+
Trp
CCA
[ENA]
¡û
>W1810269926
PREK01000010
Gammaproteobacteria
Acinetobacter indicus IHIT31669 [PREK]
86729
86654
-
Trp
CCA
[ENA]
¡û
>W1810270026
PREL01000016
Gammaproteobacteria
Acinetobacter indicus IHIT32429 [PREL]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810270080
PREM01000010
Gammaproteobacteria
Acinetobacter indicus IHIT32859 [PREM]
92621
92546
-
Trp
CCA
[ENA]
¡û
>W1810270169
PREN01000027
Gammaproteobacteria
Acinetobacter indicus IHIT32860 [PREN]
222
297
+
Trp
CCA
[ENA]
¡û
>W1810270228
PREO01000011
Gammaproteobacteria
Acinetobacter indicus IHIT32861 [PREO]
91334
91259
-
Trp
CCA
[ENA]
¡û
>W1810270310
PREP01000012
Gammaproteobacteria
Acinetobacter indicus IHIT32862 [PREP]
86961
86886
-
Trp
CCA
[ENA]
¡û
>W1810270356
PREQ01000007
Gammaproteobacteria
Acinetobacter indicus IHIT33295 [PREQ]
207
282
+
Trp
CCA
[ENA]
¡û
>W1810270424
PRER01000004
Gammaproteobacteria
Acinetobacter indicus IHIT33298 [PRER]
104304
104229
-
Trp
CCA
[ENA]
¡û
>W1810270498
PRES01000031
Gammaproteobacteria
Acinetobacter indicus IHIT33301 [PRES]
18642
18567
-
Trp
CCA
[ENA]
¡û
>W1810270592
PRET01000008
Gammaproteobacteria
Acinetobacter indicus LUH5041 [PRET]
103978
103903
-
Trp
CCA
[ENA]
¡û
>W1810378524
PXJD01000011
Gammaproteobacteria
Acinetobacter radioresistens A154 [PXJD]
180
255
+
Trp
CCA
[ENA]
¡û
>W1810378556
PXJE01000017
Gammaproteobacteria
Acinetobacter radioresistens A145 [PXJE]
54002
53927
-
Trp
CCA
[ENA]
¡û
>W10102541
ACPO01000034
Gammaproteobacteria
Acinetobacter radioresistens SH164 [ACPO]
53
128
+
Trp
CCA
[ENA]
¡û
>W1510016436
BBSF01000036
Gammaproteobacteria
Acinetobacter indicus DSM 25388 [BBSF]
176
251
+
Trp
CCA
[ENA]
¡û
>W11102697
ACPO01000034
Gammaproteobacteria
Acinetobacter radioresistens SH164 [ACPO]
53
128
+
Trp
CCA
[ENA]
¡û
>W1511387401
JSUS01000044
Gammaproteobacteria
Acinetobacter sp. A47 [JSUS]
182
257
+
Trp
CCA
[ENA]
¡û
>W1511478285
JWHB01000017
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
76
151
+
Trp
CCA
[ENA]
¡û
>W1511547831
JZRF01000032
Gammaproteobacteria
Acinetobacter indicus KM7 [JZRF]
88981
88906
-
Trp
CCA
[ENA]
¡û
>W1511583271
LATS01000025
Gammaproteobacteria
Acinetobacter radioresistens CM38 [LATS]
157
232
+
Trp
CCA
[ENA]
¡û
>WENV000401
AACY020012053
Marine microbial communities from Global Ocean Sampling (GOS)
674
751
+
Trp
CCA
[ENA]
>W121046842
AIDZ01000005
Gammaproteobacteria
Acinetobacter radioresistens DSM 6976 = NBRC 102413 [AIDZ]
440
515
+
Trp
CCA
[ENA]
¡û
>W121110833
ALIR01000005
Gammaproteobacteria
Acinetobacter radioresistens WC-A-157 [ALIR]
374159
374084
-
Trp
CCA
[ENA]
¡û
>W121126386
BAGY01000024
Gammaproteobacteria
Acinetobacter radioresistens DSM 6976 = NBRC 102413 [BAGY]
123
198
+
Trp
CCA
[ENA]
¡û
>W1611065539
MBPQ01000879
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
359057
358982
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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