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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45784 (83 seq.)
>W1710793528
LJPL01000008
Bacillota
Streptococcus pasteurianus [LJPL]
18662
18578
-
Ser
GGA
[ENA]
¡û
>W1710989095
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1190591
1190675
+
Ser
GGA
[ENA]
¡û
>W1711006298
LQOF01000341
Bacillota
Streptococcus gallolyticus [LQOF]
11220
11136
-
Ser
GGA
[ENA]
¡û
>W1711019334
LQXV01000250
Bacillota
Streptococcus gallolyticus [LQXV]
13492
13576
+
Ser
GGA
[ENA]
¡û
>W1711080499
LSRA01000013
Bacillota
Streptococcus pasteurianus [LSRA]
39292
39376
+
Ser
GGA
[ENA]
¡û
>W1711207054
LXFC01000014
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
30964
31048
+
Ser
GGA
[ENA]
¡û
>W1711305562
MAMV01000005
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
30964
31048
+
Ser
GGA
[ENA]
¡û
>C171084857
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
430083
430167
+
Ser
GGA
-
¡û
>WENV180116355
OAQU01000042
[OAQU] human gut metagenome; ENVO:feces
18477
18393
-
Ser
GGA
[ENA]
¢þ
>WENV180116469
OAQV01000024
[OAQV] human gut metagenome; ENVO:feces
30544
30628
+
Ser
GGA
[ENA]
¢þ
>WENV180400603
OBRI01018381
[OBRI] human gut metagenome; ENVO:feces
270
186
-
Ser
GGA
[ENA]
¢þ
>WENV180401600
OBRM01000252
[OBRM] human gut metagenome; ENVO:feces
1253
1169
-
Ser
GGA
[ENA]
¢þ
>WENV180403180
OBRR01030872
[OBRR] human gut metagenome; ENVO:feces
286
370
+
Ser
GGA
[ENA]
¢þ
>WENV180415661
OBVF01000070
[OBVF] human gut metagenome; faeces
37802
37886
+
Ser
GGA
[ENA]
¢þ
>WENV181338163
OFMF01000761
[OFMF] human gut metagenome; human gut
11211
11295
+
Ser
GGA
[ENA]
¢þ
>WENV181555163
OGIT01000057
[OGIT] metagenome; Human gut stool
40388
40472
+
Ser
GGA
[ENA]
¢þ
>WENV181557836
OGIW01000270
[OGIW] metagenome; Human gut stool
16330
16246
-
Ser
GGA
[ENA]
¢þ
>WENV181580322
OGJZ01032749
[OGJZ] metagenome; Human gut stool
634
718
+
Ser
GGA
[ENA]
¢þ
>WENV181879430
OGXF01000301
[OGXF] human gut metagenome; faeces
30540
30624
+
Ser
GGA
[ENA]
¢þ
>WENV181887352
OGXL01003916
[OGXL] human gut metagenome; faeces
9107
9023
-
Ser
GGA
[ENA]
¢þ
>WENV181935818
OGYU01025142
[OGYU] human gut metagenome; faeces
161
77
-
Ser
GGA
[ENA]
¢þ
>WENV181948688
OGZE01020974
[OGZE] human gut metagenome; faeces
549
633
+
Ser
GGA
[ENA]
¢þ
>WENV181965014
OGZS01000156
[OGZS] human gut metagenome; faeces
40025
40109
+
Ser
GGA
[ENA]
¢þ
>WENV182140633
OHKR01000027
[OHKR] human gut metagenome; feces
18475
18391
-
Ser
GGA
[ENA]
¢þ
>WENV182149135
OHLG01000283
[OHLG] human gut metagenome; feces
5156
5240
+
Ser
GGA
[ENA]
¢þ
>WENV182164413
OHMN01000266
[OHMN] human gut metagenome; faeces
18479
18395
-
Ser
GGA
[ENA]
¢þ
>WENV182185623
OHOG01000045
[OHOG] human gut metagenome; feces
16360
16276
-
Ser
GGA
[ENA]
¢þ
>WENV182230075
OHRK01000042
[OHRK] human gut metagenome; feces
1486
1570
+
Ser
GGA
[ENA]
¢þ
>WENV182394802
OIEJ01001575
[OIEJ] human gut metagenome; human gut
3275
3359
+
Ser
GGA
[ENA]
¢þ
>WENV182406164
OIEX01000936
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
2733
2817
+
Ser
GGA
[ENA]
¢þ
>WENV182413181
OIFX01000149
[OIFX] human gut metagenome; stool
18499
18415
-
Ser
GGA
[ENA]
¢þ
>W141261887
CCBC010000145
Bacillota
Streptococcus gallolyticus [CCBC]
13880
13796
-
Ser
GGA
[ENA]
¡û
>WENV182811282
OJXK01000055
[OJXK] human gut metagenome; human gut
18477
18393
-
Ser
GGA
[ENA]
¢þ
>WENV182814511
OJYK01000238
[OJYK] human gut metagenome; human gut
4753
4837
+
Ser
GGA
[ENA]
¢þ
>WENV182820241
OKAL01000061
[OKAL] human gut metagenome; human gut
18477
18393
-
Ser
GGA
[ENA]
¢þ
>WENV182842409
OKIE01000087
[OKIE] human gut metagenome; human gut
4437
4521
+
Ser
GGA
[ENA]
¢þ
>WENV182848215
OKKG01000098
[OKKG] human gut metagenome; human gut
32705
32789
+
Ser
GGA
[ENA]
¢þ
>WENV182854705
OKMW01000237
[OKMW] human gut metagenome; human gut
18477
18393
-
Ser
GGA
[ENA]
¢þ
>WENV182856241
OKNJ01000021
[OKNJ] human gut metagenome; human gut
29385
29469
+
Ser
GGA
[ENA]
¢þ
>WENV182860000
OKOQ01001880
[OKOQ] human gut metagenome; human gut
152
68
-
Ser
GGA
[ENA]
¢þ
>WENV182861995
OKPJ01000055
[OKPJ] human gut metagenome; human gut
39952
40036
+
Ser
GGA
[ENA]
¢þ
>WENV182951133
OKVT01007358
[OKVT] human gut metagenome; human gut
77
161
+
Ser
GGA
[ENA]
¢þ
>WENV183537273
OOAG01072970
[OOAG] human gut metagenome; human gut
506
422
-
Ser
GGA
[ENA]
¢þ
>WENV183602863
OODK01000272
[OODK] human gut metagenome; human gut
18477
18393
-
Ser
GGA
[ENA]
¢þ
>WENV183605978
OODN01000187
[OODN] human gut metagenome; human gut
18479
18395
-
Ser
GGA
[ENA]
¢þ
>WENV183609119
OODQ01001414
[OODQ] human gut metagenome; human gut
4120
4204
+
Ser
GGA
[ENA]
¢þ
>WENV183780889
PPYF01188123
[PPYF] human gut metagenome; stool from patient with Crohn's disease
18501
18417
-
Ser
GGA
[ENA]
¢þ
>C181211604
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
430173
430257
+
Ser
GGA
-
¡û
>C181214985
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
406290
406374
+
Ser
GGA
-
¡û
>C191166401
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
368567
368651
+
Ser
GGA
-
¡û
>W141727311
JNCV01000018
Bacillota
Streptococcus macedonicus [JNCV]
29782
29866
+
Ser
GGA
[ENA]
¡û
>W1810069582
PEBL01000019
Bacillota
Streptococcus macedonicus 211MA [PEBL]
29533
29617
+
Ser
GGA
[ENA]
¡û
>W1810069597
PEBM01000002
Bacillota
Streptococcus macedonicus 27MV [PEBM]
29567
29651
+
Ser
GGA
[ENA]
¡û
>W1810069660
PEBN01000035
Bacillota
Streptococcus macedonicus 19AS [PEBN]
26652
26568
-
Ser
GGA
[ENA]
¡û
>W1810188081
PKIB01000014
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
273
189
-
Ser
GGA
[ENA]
¡û
>W1810904646
QVEM01000014
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
19691
19607
-
Ser
GGA
[ENA]
¡û
>W1810905291
QVEY01000028
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
19047
18963
-
Ser
GGA
[ENA]
¡û
>W1810907449
QVHT01000009
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
18990
18906
-
Ser
GGA
[ENA]
¡û
>W1810907657
QVHX01000018
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
18477
18393
-
Ser
GGA
[ENA]
¡û
>W10127585
AEEM01000006
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
30840
30924
+
Ser
GGA
[ENA]
¡û
>C10111581
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
390901
390985
+
Ser
GGA
[Ensembl]
¡û
>W11300846
AEEL01000006
Bacillota
Streptococcus equinus ATCC 700338 [AEEL]
30484
30568
+
Ser
GGA
[ENA]
¡û
>C11120584
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
402692
402776
+
Ser
GGA
[Ensembl]
¡û
>C11121175
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
339944
340028
+
Ser
GGA
[Ensembl]
¡û
>W1511447395
JUYN01000048
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
39322
39406
+
Ser
GGA
[ENA]
¡û
>W11135073
AEEM01000006
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
30840
30924
+
Ser
GGA
[ENA]
¡û
>W1511530607
JYKU01000004
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
30971
31055
+
Ser
GGA
[ENA]
¡û
>C121017484
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
381397
381481
+
Ser
GGA
[Ensembl]
¡û
>C121018000
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
404642
404726
+
Ser
GGA
[Ensembl]
¡û
>C161059318
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1588986
1588902
-
Ser
GGA
[Ensembl]
¡û
>W1610514146
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
291142
291226
+
Ser
GGA
[ENA]
¡û
>W1610843971
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1190591
1190675
+
Ser
GGA
[ENA]
¡û
>W1610856948
LQOF01000341
Bacillota
Streptococcus gallolyticus [LQOF]
11220
11136
-
Ser
GGA
[ENA]
¡û
>W1610867622
LQXV01000250
Bacillota
Streptococcus gallolyticus [LQXV]
13492
13576
+
Ser
GGA
[ENA]
¡û
>W1610919366
LSRA01000013
Bacillota
Streptococcus pasteurianus [LSRA]
39292
39376
+
Ser
GGA
[ENA]
¡û
>W1610995084
LXFC01000014
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
30964
31048
+
Ser
GGA
[ENA]
¡û
>W1710520160
FNFJ01000006
Bacillota
Streptococcus gallolyticus [FNFJ]
29901
29985
+
Ser
GGA
[ENA]
¡û
>W1710521632
FNGN01000006
Bacillota
Streptococcus gallolyticus [FNGN]
33003
32919
-
Ser
GGA
[ENA]
¡û
>W1710538106
FNUH01000006
Bacillota
Streptococcus gallolyticus [FNUH]
91288
91204
-
Ser
GGA
[ENA]
¡û
>W1710545447
FOBM01000011
Bacillota
Streptococcus gallolyticus [FOBM]
29201
29285
+
Ser
GGA
[ENA]
¡û
>W1710551948
FOGM01000007
Bacillota
Streptococcus gallolyticus [FOGM]
29925
30009
+
Ser
GGA
[ENA]
¡û
>W1710558556
FOLZ01000005
Bacillota
Streptococcus gallolyticus [FOLZ]
31886
31970
+
Ser
GGA
[ENA]
¡û
>W1710578359
FPBN01000009
Bacillota
Streptococcus gallolyticus [FPBN]
31892
31976
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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