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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45804 (27 seq.)
>W1711411800
MGTO01000030
Thermodesulfobacteriota
Desulfuromonadales bacterium GWC2_61_20 [MGTO]
2322
2235
-
Ser
CGA
[ENA]
¡û
>W1711411870
MGTQ01000039
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_61_12 [MGTQ]
16711
16798
+
Ser
CGA
[ENA]
¡û
>W1711420803
MHXM01000139
Thermodesulfobacteriota
Desulfuromonadaceae bacterium GWC2_58_13 [MHXM]
13059
12972
-
Ser
CGA
[ENA]
¡û
>C171039001
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
3034948
3034861
-
Ser
CGA
-
¡û
>C171039160
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2563502
2563589
+
Ser
CGA
-
¡û
>C015909
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
410607
410694
+
Ser
CGA
[Ensembl]
¡û
>w020976
AAVG01000052
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [AAVG]
7926
7842
-
Ser
CGA
[ENA]
¡û
>WENV180108876
OAPI01013321
[OAPI] marine metagenome; ENVO.00002150
210
297
+
Ser
CGA
[ENA]
¢þ
>WENV180296592
OBJA01001040
[OBJA] soil metagenome; sediment, water from around vicinity
229
142
-
Ser
CGA
[ENA]
¢þ
>WENV180345974
OBLN01016288
[OBLN] sediment metagenome; sediment
1036
949
-
Ser
CGA
[ENA]
¢þ
>WENV180346003
OBLN01018850
[OBLN] sediment metagenome; sediment
88
1
-
Ser
CGA
[ENA]
¢þ
>W141076087
ATBO01000113
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
13544
13631
+
Ser
CGA
[ENA]
¡û
>WENV181297317
OFHK01028215
[OFHK] soil metagenome; Clay
669
756
+
Ser
CGA
[ENA]
¢þ
>WENV181311510
OFJB01003267
[OFJB] sludge metagenome; sludge
978
891
-
Ser
CGA
[ENA]
¢þ
>C08005305
CP001089
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [CP001089]
3330262
3330349
+
Ser
CGA
[Ensembl]
¡û
>WENV170006206
AMWB02007394
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
3373
3460
+
Ser
CGA
[ENA]
¢þ
>WENV170657645
JTFP01006559
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
2967
2880
-
Ser
CGA
[ENA]
¢þ
>WENV170657972
JTFP01038606
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1180
1093
-
Ser
CGA
[ENA]
¢þ
>WENV170692869
LGOV01039102
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1403
1490
+
Ser
CGA
[ENA]
¢þ
>WENV170698981
LGVF01453028
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
755
668
-
Ser
CGA
[ENA]
¢þ
>W1910230090
FOJJ01000039
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
79897
79984
+
Ser
CGA
[ENA]
¡û
>C151066473
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
256537
256624
+
Ser
CGA
[Ensembl]
¡û
>W1511480367
JWJD01000001
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus DSM 17813 [JWJD]
515125
515038
-
Ser
CGA
[ENA]
¡û
>C161082904
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
562119
562206
+
Ser
CGA
[Ensembl]
¡û
>W1710514060
FNAQ01000003
Thermodesulfobacteriota
Desulfuromonas thiophila [FNAQ]
157315
157402
+
Ser
CGA
[ENA]
¡û
>W1710521934
FNGU01000002
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
125140
125053
-
Ser
CGA
[ENA]
¡û
>W1710600646
FUWR01000004
Thermodesulfobacteriota
Trichlorobacter thiogenes [FUWR]
161218
161131
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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