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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45811 (58 seq.)
>C171057658
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3934774
3934689
-
Leu
TAA
-
¡û
>C171057660
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3925141
3925054
-
Leu
TAA
-
¡û
>W131145900
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2270146
2270059
-
Leu
TAA
[ENA]
¡û
>w027795
ABCM01000009
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
66595
66506
-
Leu
TAA
[ENA]
¡û
>WENV180398020
OBPZ01053252
[OBPZ] marine metagenome; ENVO:00002010
157
242
+
Leu
TAA
[ENA]
¢þ
>W141142855
AWRU01000006
Bacteroidota
Pedobacter sp. V48 [AWRU]
459059
458972
-
Leu
TAA
[ENA]
¡û
>W141142857
AWRU01000006
Bacteroidota
Pedobacter sp. V48 [AWRU]
458832
458745
-
Leu
TAA
[ENA]
¡û
>W141222946
BACV01000510
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
9680
9595
-
Leu
TAA
[ENA]
¡û
>WENV183743540
PJUJ01004842
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1714
1629
-
Leu
TAA
[ENA]
¢þ
>WENV183743542
PJUJ01004842
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1487
1402
-
Leu
TAA
[ENA]
¢þ
>WENV170995627
MWWF01029499
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
550
637
+
Leu
TAA
[ENA]
¢þ
>C181094350
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
2723941
2724026
+
Leu
TAA
-
¡û
>C181094352
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
2724168
2724253
+
Leu
TAA
-
¡û
>C191226437
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2962407
2962492
+
Leu
TAA
-
¡û
>C191226439
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2962668
2962753
+
Leu
TAA
-
¡û
>W09109614
ABUJ01000049
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
9775
9862
+
Leu
TAA
[ENA]
¡û
>W141727625
JNFF01000033
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
47
132
+
Leu
TAA
[ENA]
¡û
>C09108566
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
3641594
3641507
-
Leu
TAA
[Ensembl]
¡û
>W1911647373
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
1529448
1529533
+
Leu
TAA
[ENA]
¡û
>W1911647375
QAJL01000001
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
1558485
1558570
+
Leu
TAA
[ENA]
¡û
>W1810076493
PEIM01000065
Bacteroidota
Pedobacter sp. IW39 [PEIM]
16905
16820
-
Leu
TAA
[ENA]
¡û
>W1810474671
QAIL01000572
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
244
329
+
Leu
TAA
[ENA]
¡û
>W1810503901
QBKM01000001
Bacteroidota
Pedobacter sp. YR016 [QBKM]
650308
650223
-
Leu
TAA
[ENA]
¡û
>W1810503903
QBKM01000001
Bacteroidota
Pedobacter sp. YR016 [QBKM]
650081
649996
-
Leu
TAA
[ENA]
¡û
>W1810594616
QGDC01000004
Bacteroidota
Mucilaginibacter hurinus ZR32 [QGDC]
110908
110993
+
Leu
TAA
[ENA]
¡û
>W1810606150
QGNZ01000001
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
421508
421423
-
Leu
TAA
[ENA]
¡û
>W1810606152
QGNZ01000001
Bacteroidota
Pedobacter yonginense KCTC22721 [QGNZ]
417609
417524
-
Leu
TAA
[ENA]
¡û
>W1810676150
QKLU01000005
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
25100
25015
-
Leu
TAA
[ENA]
¡û
>W1810676152
QKLU01000005
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
20664
20579
-
Leu
TAA
[ENA]
¡û
>W1810704351
QMHQ01000003
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
223788
223873
+
Leu
TAA
[ENA]
¡û
>W1810704353
QMHQ01000003
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
224056
224141
+
Leu
TAA
[ENA]
¡û
>W1511509432
JXRA01000089
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
14665
14752
+
Leu
TAA
[ENA]
¡û
>W1511509434
JXRA01000089
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
14914
14999
+
Leu
TAA
[ENA]
¡û
>W1511646568
LECU01000005
Bacteroidota
Pedobacter sp. BMA [LECU]
164756
164841
+
Leu
TAA
[ENA]
¡û
>W1511646584
LECU01000007
Bacteroidota
Pedobacter sp. BMA [LECU]
280790
280705
-
Leu
TAA
[ENA]
¡û
>C161049179
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1436230
1436145
-
Leu
TAA
[Ensembl]
¡û
>C161049182
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
1433397
1433312
-
Leu
TAA
[Ensembl]
¡û
>C161073058
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
337047
336962
-
Leu
TAA
[Ensembl]
¡û
>C161073060
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
336798
336713
-
Leu
TAA
[Ensembl]
¡û
>W1610612136
LGEL01000067
Bacteroidota
Pedobacter panaciterrae [LGEL]
5492
5405
-
Leu
TAA
[ENA]
¡û
>W1610612138
LGEL01000067
Bacteroidota
Pedobacter panaciterrae [LGEL]
5265
5180
-
Leu
TAA
[ENA]
¡û
>W1710519663
FNEX01000004
Bacteroidota
Pedobacter sp. ok626 [FNEX]
160729
160816
+
Leu
TAA
[ENA]
¡û
>W1710519665
FNEX01000004
Bacteroidota
Pedobacter sp. ok626 [FNEX]
160992
161079
+
Leu
TAA
[ENA]
¡û
>W1710522081
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
87250
87165
-
Leu
TAA
[ENA]
¡û
>W1710522083
FNGY01000002
Bacteroidota
Pedobacter steynii [FNGY]
64919
64834
-
Leu
TAA
[ENA]
¡û
>W1710522156
FNGZ01000005
Bacteroidota
Pedobacter antarcticus [FNGZ]
273840
273755
-
Leu
TAA
[ENA]
¡û
>W1710522158
FNGZ01000005
Bacteroidota
Pedobacter antarcticus [FNGZ]
268919
268834
-
Leu
TAA
[ENA]
¡û
>W1710533295
FNRA01000004
Bacteroidota
Pedobacter hartonius [FNRA]
3535
3448
-
Leu
TAA
[ENA]
¡û
>W1710533297
FNRA01000004
Bacteroidota
Pedobacter hartonius [FNRA]
3285
3198
-
Leu
TAA
[ENA]
¡û
>W1710560871
FONS01000006
Bacteroidota
Pedobacter antarcticus [FONS]
47065
47150
+
Leu
TAA
[ENA]
¡û
>W1710560873
FONS01000006
Bacteroidota
Pedobacter antarcticus [FONS]
51985
52070
+
Leu
TAA
[ENA]
¡û
>W1710583240
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
1027742
1027657
-
Leu
TAA
[ENA]
¡û
>W1710583242
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
1008813
1008726
-
Leu
TAA
[ENA]
¡û
>W1710606358
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
761870
761783
-
Leu
TAA
[ENA]
¡û
>W1710606809
FWYB01000025
Bacteroidota
Pedobacter nyackensis [FWYB]
34236
34149
-
Leu
TAA
[ENA]
¡û
>W1710606811
FWYB01000025
Bacteroidota
Pedobacter nyackensis [FWYB]
33974
33887
-
Leu
TAA
[ENA]
¡û
>W1710733642
LGEL01000067
Bacteroidota
Pedobacter panaciterrae [LGEL]
5492
5405
-
Leu
TAA
[ENA]
¡û
>W1710733644
LGEL01000067
Bacteroidota
Pedobacter panaciterrae [LGEL]
5265
5180
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK