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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458200 (55 seq.)
>W1711009552
LQQU01000002
Betaproteobacteria
Crenobacter luteus [LQQU]
19402
19477
+
Glu
TTC
[ENA]
¡û
>W1711009554
LQQU01000002
Betaproteobacteria
Crenobacter luteus [LQQU]
19590
19665
+
Glu
TTC
[ENA]
¡û
>W1711414507
MGZO01000089
Hydrogenophilia
Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 [MGZO]
52324
52399
+
Glu
TTC
[ENA]
¡û
>W131159957
AQWB01000012
Betaproteobacteria
Rhodocyclus sp. UW 659-1-F08 [AQWB]
8161
8236
+
Glu
TTC
[ENA]
¡û
>W131170323
ARFL01000002
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
1004244
1004319
+
Glu
TTC
[ENA]
¡û
>W131186114
ARVV01000001
Betaproteobacteria
Methyloversatilis discipulorum RZ18-153 [ARVV]
2802060
2801985
-
Glu
TTC
[ENA]
¡û
>W131223604
AUCE01000018
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
57736
57811
+
Glu
TTC
[ENA]
¡û
>W131223761
AUCH01000013
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
23623
23698
+
Glu
TTC
[ENA]
¡û
>W131223764
AUCH01000013
Betaproteobacteria
Azovibrio restrictus DSM 23866 [AUCH]
23975
24050
+
Glu
TTC
[ENA]
¡û
>W1711718067
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
295581
295506
-
Glu
TTC
[ENA]
¡û
>W1711718070
MTHD01000002
Betaproteobacteria
Azonexus hydrophilus [MTHD]
295233
295158
-
Glu
TTC
[ENA]
¡û
>C171049765
CP016448
Betaproteobacteria
Methyloversatilis sp. RAC08 [CP016448]
55824
55749
-
Glu
TTC
-
¡û
>WENV180255382
OBEQ010720030
[OBEQ] groundwater metagenome; groundwater
2530
2455
-
Glu
TTC
[ENA]
¢þ
>WENV180284279
OBID01025925
[OBID] metagenome; sludge
308
233
-
Glu
TTC
[ENA]
¢þ
>WENV181190686
OEPS010001057
[OEPS] soil metagenome; soil
4230
4155
-
Glu
TTC
[ENA]
¢þ
>WENV181222958
OFDC01000833
[OFDC] hot springs metagenome; Water
15014
14939
-
Glu
TTC
[ENA]
¢þ
>W141216063
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
282756
282831
+
Glu
TTC
[ENA]
¡û
>WENV170006102
AMQJ01033504
[AMQJ] sediment metagenome; subsurface aquifer sediment
54
129
+
Glu
TTC
[ENA]
¢þ
>WENV170011677
APMI01081498
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1643
1718
+
Glu
TTC
[ENA]
¢þ
>W141426801
JEMX01000098
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
30543
30618
+
Glu
TTC
[ENA]
¡û
>W141426829
JEMY01000036
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
8260
8335
+
Glu
TTC
[ENA]
¡û
>WENV170639289
JFJP01001759
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
12738
12663
-
Glu
TTC
[ENA]
¢þ
>WENV170639435
JFJP01002685
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2
77
+
Glu
TTC
[ENA]
¢þ
>WENV170639510
JFJP01003807
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
423
498
+
Glu
TTC
[ENA]
¢þ
>WENV170639820
JFJP01008968
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
5312
5387
+
Glu
TTC
[ENA]
¢þ
>WENV170657024
JTFO01070072
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
257
332
+
Glu
TTC
[ENA]
¢þ
>C181060396
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
63919
63994
+
Glu
TTC
-
¡û
>C181060399
CP022187
Betaproteobacteria
Parazoarcus communis TSPY31 [CP022187]
64327
64402
+
Glu
TTC
-
¡û
>C181060460
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
2863397
2863472
+
Glu
TTC
-
¡û
>C181060463
CP022188
Betaproteobacteria
Parazoarcus communis TSNA42 [CP022188]
2863806
2863881
+
Glu
TTC
-
¡û
>C181121209
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1975818
1975743
-
Glu
TTC
-
¡û
>C181121212
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1975415
1975340
-
Glu
TTC
-
¡û
>C10101098
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
22473
22548
+
Glu
TTC
[Ensembl]
¡û
>C10101123
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4672695
4672620
-
Glu
TTC
[Ensembl]
¡û
>W1610506404
FLQX01000001
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
76162
76087
-
Glu
TTC
[ENA]
¡û
>W1610506407
FLQX01000002
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
22359
22284
-
Glu
TTC
[ENA]
¡û
>W1610506462
FLQY01000168
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
34075
34150
+
Glu
TTC
[ENA]
¡û
>W1610506467
FLQY01000179
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
171
246
+
Glu
TTC
[ENA]
¡û
>W1610593867
LDUG01000008
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
54008
53933
-
Glu
TTC
[ENA]
¡û
>W1610858072
LQQU01000002
Betaproteobacteria
Crenobacter luteus [LQQU]
19402
19477
+
Glu
TTC
[ENA]
¡û
>W1610858074
LQQU01000002
Betaproteobacteria
Crenobacter luteus [LQQU]
19590
19665
+
Glu
TTC
[ENA]
¡û
>WENV079708
AATN01000002
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
45443
45368
-
Glu
TTC
[ENA]
>WENV079723
AATN01000023
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
28455
28530
+
Glu
TTC
[ENA]
>WENV079957
AATO01000009
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
80804
80879
+
Glu
TTC
[ENA]
>WENV079966
AATO01000038
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
8363
8288
-
Glu
TTC
[ENA]
>WENV080012
AATO01000615
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
353
278
-
Glu
TTC
[ENA]
>WENV080017
AATO01000790
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
832
907
+
Glu
TTC
[ENA]
>WENV080021
AATO01000892
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
2857
2932
+
Glu
TTC
[ENA]
>WENV080136
AATO01008292
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
506
581
+
Glu
TTC
[ENA]
>WENV080206
AATO01012468
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
277
352
+
Glu
TTC
[ENA]
>W1710498907
FLQX01000001
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
76162
76087
-
Glu
TTC
[ENA]
¡û
>W1710498910
FLQX01000002
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
22359
22284
-
Glu
TTC
[ENA]
¡û
>W1710498965
FLQY01000168
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
34075
34150
+
Glu
TTC
[ENA]
¡û
>W1710498970
FLQY01000179
Betaproteobacteria
Candidatus Propionivibrio aalborgensis S1 [FLQY]
171
246
+
Glu
TTC
[ENA]
¡û
>W1710713342
LDUG01000008
Betaproteobacteria
Thiobacillus denitrificans [LDUG]
54008
53933
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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