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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45831 (52 seq.)
>W1711003177
LQGV01000004
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
194796
194881
+
Ser
TGA
[ENA]
¡û
>W1711022946
LRAD01000057
Actinomycetota
Microbacterium laevaniformans [LRAD]
71021
70936
-
Ser
TGA
[ENA]
¡û
>W1711061099
LRYC01000019
Actinomycetota
Microbacterium hominis [LRYC]
67374
67459
+
Ser
TGA
[ENA]
¡û
>W1711082425
LSTV01000005
Actinomycetota
Microbacterium oleivorans [LSTV]
406077
406162
+
Ser
TGA
[ENA]
¡û
>W131162125
AQYI01000002
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
99523
99438
-
Ser
TGA
[ENA]
¡û
>W131185007
ARTJ01000003
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
477438
477523
+
Ser
TGA
[ENA]
¡û
>W1711270751
LZEM01000018
Actinomycetota
Microbacterium arborescens [LZEM]
408570
408483
-
Ser
TGA
[ENA]
¡û
>W1711318593
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
1668427
1668342
-
Ser
TGA
[ENA]
¡û
>W131235581
AULS01000002
Actinomycetota
Microbacterium luticocti DSM 19459 [AULS]
155996
155909
-
Ser
TGA
[ENA]
¡û
>W1711385703
MEEL01000067
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
4916
5001
+
Ser
TGA
[ENA]
¡û
>W1711501589
MKRU01000064
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
6719
6804
+
Ser
TGA
[ENA]
¡û
>W1711719896
MTIO01000005
Actinomycetota
Microbacterium oleivorans [MTIO]
58837
58922
+
Ser
TGA
[ENA]
¡û
>C171073386
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
1634638
1634551
-
Ser
TGA
-
¡û
>C171083212
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
501671
501756
+
Ser
TGA
-
¡û
>W131204576
ATCC01000006
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
386566
386651
+
Ser
TGA
[ENA]
¡û
>W141041455
AMCB01000312
Actinomycetota
Microbacterium sp. AO20a11 [AMCB]
1260
1345
+
Ser
TGA
[ENA]
¡û
>W141223225
BADB01000228
Actinomycetota
Microbacterium sp. B24 [BADB]
4983
5068
+
Ser
TGA
[ENA]
¡û
>W141230019
BASQ01000001
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
1331846
1331759
-
Ser
TGA
[ENA]
¡û
>W141291992
JAUF01000049
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
7398
7313
-
Ser
TGA
[ENA]
¡û
>WENV183738002
PJUD01063473
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
605
520
-
Ser
TGA
[ENA]
¢þ
>WENV183740446
PJUF01002242
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4461
4376
-
Ser
TGA
[ENA]
¢þ
>W141484312
JFYO01000004
Actinomycetota
Microbacterium oleivorans [JFYO]
322248
322163
-
Ser
TGA
[ENA]
¡û
>C181115668
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
691269
691354
+
Ser
TGA
-
¡û
>C191056014
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
683622
683709
+
Ser
TGA
-
¡û
>C191074789
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
457565
457650
+
Ser
TGA
-
¡û
>C191119724
CP034121
Actinomycetota
Microbacterium sp. RG1 [CP034121]
3037454
3037539
+
Ser
TGA
-
¡û
>W141565043
JIBF01000010
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
354161
354246
+
Ser
TGA
[ENA]
¡û
>W141817510
JQKT01000008
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
39036
38951
-
Ser
TGA
[ENA]
¡û
>W1910913718
NHRF01000005
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
37227
37314
+
Ser
TGA
[ENA]
¡û
>W1911159666
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
1386804
1386717
-
Ser
TGA
[ENA]
¡û
>W1810262628
PQSV01000001
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
1350176
1350089
-
Ser
TGA
[ENA]
¡û
>W1810698886
QMBN01000002
Actinomycetota
Microbacterium sp. SMR1 [QMBN]
804427
804514
+
Ser
TGA
[ENA]
¡û
>W1810722498
QNUV01000021
Actinomycetota
Microbacterium arborescens DSM 20754 [QNUV]
239000
238913
-
Ser
TGA
[ENA]
¡û
>W1810722562
QNUW01000019
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
511528
511615
+
Ser
TGA
[ENA]
¡û
>W1810861468
QTTX01000001
Actinomycetota
Microbacterium sp. 1294 [QTTX]
995461
995546
+
Ser
TGA
[ENA]
¡û
>W1511489510
JWSZ01000009
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
97042
97127
+
Ser
TGA
[ENA]
¡û
>W1511528970
JYJA01000030
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
149304
149219
-
Ser
TGA
[ENA]
¡û
>C161043593
CP012697
Actinomycetota
Microbacterium sp. No. 7 [CP012697]
662859
662944
+
Ser
TGA
[Ensembl]
¡û
>W121061278
AJGR01000510
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
2946
2861
-
Ser
TGA
[ENA]
¡û
>W1610068319
BCRG01000001
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
363363
363448
+
Ser
TGA
[ENA]
¡û
>W1610073998
BCWI01000005
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
155118
155033
-
Ser
TGA
[ENA]
¡û
>W1610853742
LQGV01000004
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
194796
194881
+
Ser
TGA
[ENA]
¡û
>W1610871191
LRAD01000057
Actinomycetota
Microbacterium laevaniformans [LRAD]
71021
70936
-
Ser
TGA
[ENA]
¡û
>W1610902076
LRYC01000019
Actinomycetota
Microbacterium hominis [LRYC]
67374
67459
+
Ser
TGA
[ENA]
¡û
>W1610921210
LSTV01000005
Actinomycetota
Microbacterium oleivorans [LSTV]
406077
406162
+
Ser
TGA
[ENA]
¡û
>W1611030315
LZEM01000018
Actinomycetota
Microbacterium arborescens [LZEM]
408570
408483
-
Ser
TGA
[ENA]
¡û
>W1611061936
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
1668427
1668342
-
Ser
TGA
[ENA]
¡û
>W1710065692
BCRG01000001
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
363363
363448
+
Ser
TGA
[ENA]
¡û
>W1710071116
BCWI01000005
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
155118
155033
-
Ser
TGA
[ENA]
¡û
>W1710516611
FNCR01000005
Actinomycetota
Microbacterium sp. 77mftsu3.1 [FNCR]
99456
99371
-
Ser
TGA
[ENA]
¡û
>W1710526723
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
1312455
1312368
-
Ser
TGA
[ENA]
¡û
>W1710565125
FOQZ01000002
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
38792
38707
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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