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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458328 (98 seq.)
>W1711383779
MECU01000003
Gammaproteobacteria
Shigella sp. FC130 [MECU]
35602
35527
-
Phe
GAA
[ENA]
¡û
>W1711383818
MECU01000066
Gammaproteobacteria
Shigella sp. FC130 [MECU]
179750
179825
+
Phe
GAA
[ENA]
¡û
>W1711430100
MIIW01000011
Gammaproteobacteria
Shigella sp. FC1655 [MIIW]
35652
35577
-
Phe
GAA
[ENA]
¡û
>W1711430130
MIIW01000051
Gammaproteobacteria
Shigella sp. FC1655 [MIIW]
179626
179701
+
Phe
GAA
[ENA]
¡û
>W1711430308
MIIZ01000604
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
6453
6528
+
Phe
GAA
[ENA]
¡û
>W1711430332
MIIZ01000809
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
15015
15090
+
Phe
GAA
[ENA]
¡û
>W1711608762
MOSG01000012
Gammaproteobacteria
Proteus sp. H24 [MOSG]
7658
7583
-
Phe
GAA
[ENA]
¡û
>W1711608776
MOSG01000034
Gammaproteobacteria
Proteus sp. H24 [MOSG]
10590
10515
-
Phe
GAA
[ENA]
¡û
>W1712020002
NEYX01000002
Gammaproteobacteria
Proteus mirabilis [NEYX]
55413
55488
+
Phe
GAA
[ENA]
¡û
>W1712020025
NEYX01000025
Gammaproteobacteria
Proteus mirabilis [NEYX]
168889
168814
-
Phe
GAA
[ENA]
¡û
>W1712108999
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
586312
586387
+
Phe
GAA
[ENA]
¡û
>W1712109044
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
2141316
2141241
-
Phe
GAA
[ENA]
¡û
>C171039369
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
740623
740698
+
Phe
GAA
-
¡û
>C171039401
CP015579
Gammaproteobacteria
Tatumella citrea DSM 13699 [CP015579]
3683465
3683540
+
Phe
GAA
-
¡û
>C171039450
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
740296
740371
+
Phe
GAA
-
¡û
>C171039482
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
3683138
3683213
+
Phe
GAA
-
¡û
>W131211360
ATMJ01000014
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [ATMJ]
9749
9674
-
Phe
GAA
[ENA]
¡û
>W131211386
ATMJ01000052
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [ATMJ]
932
857
-
Phe
GAA
[ENA]
¡û
>WENV181228861
OFEI01000011
[OFEI] insect metagenome; insect
66448
66373
-
Phe
GAA
[ENA]
¢þ
>WENV181228862
OFEI01000014
[OFEI] insect metagenome; insect
71647
71722
+
Phe
GAA
[ENA]
¢þ
>WENV181232033
OFEL01000204
[OFEL] insect metagenome; insect
6359
6434
+
Phe
GAA
[ENA]
¢þ
>WENV181232058
OFEL01000689
[OFEL] insect metagenome; insect
1293
1218
-
Phe
GAA
[ENA]
¢þ
>W141148062
AWXP01000005
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
77278
77353
+
Phe
GAA
[ENA]
¡û
>W141148117
AWXP01000013
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
33183
33258
+
Phe
GAA
[ENA]
¡û
>WENV182595822
OJIY01000034
[OJIY] metagenome; faeces
168875
168800
-
Phe
GAA
[ENA]
¢þ
>WENV182595897
OJIY01000083
[OJIY] metagenome; faeces
19749
19674
-
Phe
GAA
[ENA]
¢þ
>WENV183788646
PPYF01370218
[PPYF] human gut metagenome; stool from patient with Crohn's disease
54713
54788
+
Phe
GAA
[ENA]
¢þ
>WENV183788724
PPYF01370349
[PPYF] human gut metagenome; stool from patient with Crohn's disease
33501
33576
+
Phe
GAA
[ENA]
¢þ
>WENV170001442
AGFS01046487
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
68
143
+
Phe
GAA
[ENA]
¢þ
>WENV170001634
AGFS01111724
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
179
104
-
Phe
GAA
[ENA]
¢þ
>WENV170700296
LIDZ01011453
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
142962
143037
+
Phe
GAA
[ENA]
¢þ
>W141463984
JFJX01000001
Gammaproteobacteria
Tatumella sp. UCD-D_suzukii [JFJX]
140687
140612
-
Phe
GAA
[ENA]
¡û
>W141464029
JFJX01000054
Gammaproteobacteria
Tatumella sp. UCD-D_suzukii [JFJX]
57377
57452
+
Phe
GAA
[ENA]
¡û
>C181092307
CP023965
Gammaproteobacteria
Proteus vulgaris FDAARGOS_366 [CP023965]
3903044
3903119
+
Phe
GAA
-
¡û
>C181092333
CP023965
Gammaproteobacteria
Proteus vulgaris FDAARGOS_366 [CP023965]
1464693
1464618
-
Phe
GAA
-
¡û
>C181217593
LS483499
Gammaproteobacteria
Tatumella ptyseos NCTC11468 [LS483499]
599531
599606
+
Phe
GAA
-
¡û
>C181217623
LS483499
Gammaproteobacteria
Tatumella ptyseos NCTC11468 [LS483499]
3036768
3036843
+
Phe
GAA
-
¡û
>C191110561
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
3064560
3064635
+
Phe
GAA
-
¡û
>C191110619
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
506353
506278
-
Phe
GAA
-
¡û
>W09110518
ABVP01000021
Gammaproteobacteria
Proteus penneri ATCC 35198 [ABVP]
242487
242562
+
Phe
GAA
[ENA]
¡û
>W09110541
ABVP01000025
Gammaproteobacteria
Proteus penneri ATCC 35198 [ABVP]
106294
106369
+
Phe
GAA
[ENA]
¡û
>W141710918
JMPR01000018
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [JMPR]
132122
132047
-
Phe
GAA
[ENA]
¡û
>W141710960
JMPR01000054
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [JMPR]
48299
48224
-
Phe
GAA
[ENA]
¡û
>W141804927
JPIX01000004
Gammaproteobacteria
Proteus vulgaris [JPIX]
80384
80459
+
Phe
GAA
[ENA]
¡û
>W141804941
JPIX01000007
Gammaproteobacteria
Proteus vulgaris [JPIX]
168807
168732
-
Phe
GAA
[ENA]
¡û
>W1910803851
MTCG01000006
Gammaproteobacteria
Tatumella sp. OPLPL6 [MTCG]
3749
3674
-
Phe
GAA
[ENA]
¡û
>W1910803865
MTCG01000014
Gammaproteobacteria
Tatumella sp. OPLPL6 [MTCG]
753
678
-
Phe
GAA
[ENA]
¡û
>W1910857229
NBUT01000011
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
38043
38118
+
Phe
GAA
[ENA]
¡û
>W1910857235
NBUT01000015
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
78035
78110
+
Phe
GAA
[ENA]
¡û
>W1910857384
NBVR01000020
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
254446
254521
+
Phe
GAA
[ENA]
¡û
>W1910857402
NBVR01000027
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
555
480
-
Phe
GAA
[ENA]
¡û
>W1910905429
NGVR01000014
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
78163
78238
+
Phe
GAA
[ENA]
¡û
>W1910905448
NGVR01000017
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
258535
258610
+
Phe
GAA
[ENA]
¡û
>W1911580947
PENT01000015
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
39299
39224
-
Phe
GAA
[ENA]
¡û
>W1911580963
PENT01000023
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
8028
7953
-
Phe
GAA
[ENA]
¡û
>W1911581020
PENU01000009
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
161626
161551
-
Phe
GAA
[ENA]
¡û
>W1911581028
PENU01000013
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
77485
77560
+
Phe
GAA
[ENA]
¡û
>W1911581074
PENV01000005
Gammaproteobacteria
Proteus genomosp. 4 4 str. ATCC 51469 [PENV]
33923
33998
+
Phe
GAA
[ENA]
¡û
>W1911581097
PENV01000015
Gammaproteobacteria
Proteus genomosp. 4 4 str. ATCC 51469 [PENV]
30595
30520
-
Phe
GAA
[ENA]
¡û
>W1810080926
PENS01000012
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
32665
32740
+
Phe
GAA
[ENA]
¡û
>W1810080933
PENS01000016
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
63346
63271
-
Phe
GAA
[ENA]
¡û
>W1810080941
PENW01000005
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
77521
77596
+
Phe
GAA
[ENA]
¡û
>W1810081024
PENW01000034
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
149208
149283
+
Phe
GAA
[ENA]
¡û
>W1810081086
PENX01000010
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
124725
124650
-
Phe
GAA
[ENA]
¡û
>W1810081087
PENX01000011
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
77317
77392
+
Phe
GAA
[ENA]
¡û
>W1810081102
PENY01000005
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
77328
77403
+
Phe
GAA
[ENA]
¡û
>W1810081152
PENY01000022
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
250593
250668
+
Phe
GAA
[ENA]
¡û
>W1810081194
PENZ01000015
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
77140
77215
+
Phe
GAA
[ENA]
¡û
>W1810081250
PENZ01000038
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
387
462
+
Phe
GAA
[ENA]
¡û
>W1810107113
PGWT01000018
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
32909
32984
+
Phe
GAA
[ENA]
¡û
>W1810107133
PGWT01000032
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
20644
20719
+
Phe
GAA
[ENA]
¡û
>W1810107932
PHFJ01000010
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
169417
169342
-
Phe
GAA
[ENA]
¡û
>W1810107935
PHFJ01000015
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
76958
77033
+
Phe
GAA
[ENA]
¡û
>W1810116035
PHNN01000003
Gammaproteobacteria
Proteus vulgaris KCTC 2579 [PHNN]
258510
258585
+
Phe
GAA
[ENA]
¡û
>W1810583192
QEXA01000016
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
58272
58347
+
Phe
GAA
[ENA]
¡û
>W1810583215
QEXA01000025
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
8227
8152
-
Phe
GAA
[ENA]
¡û
>W1810762196
QPMG01000010
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
124725
124650
-
Phe
GAA
[ENA]
¡û
>W1810762197
QPMG01000011
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
77317
77392
+
Phe
GAA
[ENA]
¡û
>WENV11101514
AGFS01046487
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
68
143
+
Phe
GAA
[ENA]
¡û
>WENV11101706
AGFS01111724
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
179
104
-
Phe
GAA
[ENA]
¡û
>W1510651159
CVRY01000003
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
77124
77199
+
Phe
GAA
[ENA]
¡û
>W1510651179
CVRY01000005
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
246202
246277
+
Phe
GAA
[ENA]
¡û
>W1510651226
CVRZ01000004
Gammaproteobacteria
Proteus vulgaris CSUR P1868 [CVRZ]
104578
104653
+
Phe
GAA
[ENA]
¡û
>W1510651261
CVRZ01000030
Gammaproteobacteria
Proteus vulgaris CSUR P1868 [CVRZ]
15216
15291
+
Phe
GAA
[ENA]
¡û
>W1511205270
JMSP01000269
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [JMSP]
1838
1763
-
Phe
GAA
[ENA]
¡û
>W1511304540
JPKR02000004
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
203310
203385
+
Phe
GAA
[ENA]
¡û
>W1511304560
JPKR02000005
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
47432
47507
+
Phe
GAA
[ENA]
¡û
>W1511633352
LDIU01000172
Gammaproteobacteria
Proteus mirabilis SAS71 [LDIU]
494
419
-
Phe
GAA
[ENA]
¡û
>C161107995
LN907827
Gammaproteobacteria
Duffyella gerundensis [LN907827]
3362942
3363017
+
Phe
GAA
[Ensembl]
¡û
>C161108010
LN907827
Gammaproteobacteria
Duffyella gerundensis [LN907827]
3184479
3184404
-
Phe
GAA
[Ensembl]
¡û
>W1610575791
LAGR01000176
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGR]
11543
11618
+
Phe
GAA
[ENA]
¡û
>W1610575799
LAGS01000008
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
71335
71260
-
Phe
GAA
[ENA]
¡û
>W1610575810
LAGS01000027
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
75936
76011
+
Phe
GAA
[ENA]
¡û
>W1710551455
FOGC01000001
Gammaproteobacteria
Rosenbergiella nectarea [FOGC]
304795
304720
-
Phe
GAA
[ENA]
¡û
>W1710551457
FOGC01000002
Gammaproteobacteria
Rosenbergiella nectarea [FOGC]
251389
251464
+
Phe
GAA
[ENA]
¡û
>W1710694055
LAGR01000176
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGR]
11543
11618
+
Phe
GAA
[ENA]
¡û
>W1710694063
LAGS01000008
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
71335
71260
-
Phe
GAA
[ENA]
¡û
>W1710694074
LAGS01000027
Gammaproteobacteria
bacteria symbiont BFo2 of Frankliniella occidentalis [LAGS]
75936
76011
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK