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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458419 (122 seq.)
>W1710860844
LMDE01000015
Actinomycetota
Nocardioides sp. Root122 [LMDE]
77463
77390
-
Arg
ACG
[ENA]
¡û
>W1710861725
LMDV01000009
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
256172
256099
-
Arg
ACG
[ENA]
¡û
>W1710863703
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1631847
1631920
+
Arg
ACG
[ENA]
¡û
>W1710864903
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1544050
1543977
-
Arg
ACG
[ENA]
¡û
>W1710867745
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
256171
256098
-
Arg
ACG
[ENA]
¡û
>W1710867828
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
691391
691316
-
Arg
ACG
[ENA]
¡û
>W1710868016
LMIT01000010
Actinomycetota
Nocardioides sp. Root240 [LMIT]
782878
782803
-
Arg
ACG
[ENA]
¡û
>W1710878775
LMRF01000005
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
199967
200040
+
Arg
ACG
[ENA]
¡û
>W1710880660
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
400829
400756
-
Arg
ACG
[ENA]
¡û
>W1710880713
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
327442
327369
-
Arg
ACG
[ENA]
¡û
>W1710880872
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
10659
10586
-
Arg
ACG
[ENA]
¡û
>W1710881057
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1740735
1740808
+
Arg
ACG
[ENA]
¡û
>W1711126715
LUPF01000062
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
8960
9033
+
Arg
ACG
[ENA]
¡û
>W1711126792
LUPH01000302
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
5690
5763
+
Arg
ACG
[ENA]
¡û
>W1711126827
LUPI01000064
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
10017
10090
+
Arg
ACG
[ENA]
¡û
>W1711126870
LUPJ01000229
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
2311
2384
+
Arg
ACG
[ENA]
¡û
>W1711126920
LUPL01000007
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
35747
35674
-
Arg
ACG
[ENA]
¡û
>W1711126997
LUPM01000436
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
5672
5745
+
Arg
ACG
[ENA]
¡û
>W1711127009
LUPN01000118
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
7069
7142
+
Arg
ACG
[ENA]
¡û
>W1711127048
LUPO01000018
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
10102
10175
+
Arg
ACG
[ENA]
¡û
>W1711127106
LUPP01000078
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
12102
12029
-
Arg
ACG
[ENA]
¡û
>W1711127125
LUPQ01000037
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
12144
12071
-
Arg
ACG
[ENA]
¡û
>W1711187503
LWPN01000329
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
1932
2005
+
Arg
ACG
[ENA]
¡û
>W1711430438
MIJB01000003
Actinomycetota
Aeromicrobium sp. PE09-221 [MIJB]
131099
131024
-
Arg
ACG
[ENA]
¡û
>W1711492202
MKKE01000077
Actinomycetota
Saccharomonospora sp. CUA-673 [MKKE]
159359
159434
+
Arg
ACG
[ENA]
¡û
>W131226741
AUEP01000009
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
130157
130230
+
Arg
ACG
[ENA]
¡û
>W131229406
AUGU01000009
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
137307
137380
+
Arg
ACG
[ENA]
¡û
>WENV180000028
CZKA01000022
[CZKA] metagenome; liquid mineral medium
32032
31959
-
Arg
ACG
[ENA]
¢þ
>WENV180000091
CZKB01000027
[CZKB] metagenome; liquid mineral medium
43644
43717
+
Arg
ACG
[ENA]
¢þ
>WENV180691071
OCZS010055670
[OCZS] soil metagenome; soil
480
553
+
Arg
ACG
[ENA]
¢þ
>WENV181222871
OFDC01000437
[OFDC] hot springs metagenome; Water
2332
2405
+
Arg
ACG
[ENA]
¢þ
>W141241358
CAHG01000006
Actinomycetota
Aeromicrobium massiliense JC14 [CAHG]
104232
104157
-
Arg
ACG
[ENA]
¡û
>W141277563
JAER01000049
Actinomycetota
Nocardioides sp. J54 [JAER]
23899
23972
+
Arg
ACG
[ENA]
¡û
>WENV170229492
CEQG01124155
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1856
1783
-
Arg
ACG
[ENA]
¢þ
>WENV170379189
CETV01101308
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
761
688
-
Arg
ACG
[ENA]
¢þ
>WENV170552327
CXWJ01055684
[CXWJ] wastewater metagenome; activated sludge
3364
3439
+
Arg
ACG
[ENA]
¢þ
>WENV170727576
LULE01000535
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
12102
12029
-
Arg
ACG
[ENA]
¢þ
>WENV170728007
LULE01006640
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
3133
3060
-
Arg
ACG
[ENA]
¢þ
>WENV170728691
LULF01000176
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
10102
10175
+
Arg
ACG
[ENA]
¢þ
>WENV170730626
LULH01000734
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
7069
7142
+
Arg
ACG
[ENA]
¢þ
>WENV170731422
LULI01000243
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
5672
5745
+
Arg
ACG
[ENA]
¢þ
>WENV170733898
LULK01000332
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
288
361
+
Arg
ACG
[ENA]
¢þ
>WENV170734845
LULK01024121
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
443
370
-
Arg
ACG
[ENA]
¢þ
>WENV170736561
LULM01008357
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
771
698
-
Arg
ACG
[ENA]
¢þ
>WENV170736955
LULN01000229
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
2311
2384
+
Arg
ACG
[ENA]
¢þ
>WENV170737462
LULO01000170
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
10017
10090
+
Arg
ACG
[ENA]
¢þ
>WENV170739299
LULQ01000151
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
5690
5763
+
Arg
ACG
[ENA]
¢þ
>WENV170740195
LULR01002590
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
6463
6390
-
Arg
ACG
[ENA]
¢þ
>WENV170741787
LULT01004166
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
1829
1756
-
Arg
ACG
[ENA]
¢þ
>WENV170742198
LULU01003881
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
2121
2048
-
Arg
ACG
[ENA]
¢þ
>WENV170743532
LULW01000364
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
8960
9033
+
Arg
ACG
[ENA]
¢þ
>WENV170743606
LULW01000864
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
6449
6376
-
Arg
ACG
[ENA]
¢þ
>WENV170746245
LULZ01017369
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
801
728
-
Arg
ACG
[ENA]
¢þ
>WENV170758896
LUMS01000222
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
11912
11839
-
Arg
ACG
[ENA]
¢þ
>WENV170760789
LUMU01000178
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
12144
12071
-
Arg
ACG
[ENA]
¢þ
>WENV170761936
LUMW01000137
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
10102
10175
+
Arg
ACG
[ENA]
¢þ
>C191158861
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
2310260
2310187
-
Arg
ACG
-
¡û
>C191159449
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
1405111
1405184
+
Arg
ACG
-
¡û
>C191181580
CP040695
Actinomycetota
Nocardioides sp. S-1144 [CP040695]
118181
118254
+
Arg
ACG
-
¡û
>C191186704
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3280247
3280174
-
Arg
ACG
-
¡û
>C191187014
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
2699439
2699366
-
Arg
ACG
-
¡û
>W141564502
JIAV01000012
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
79924
79999
+
Arg
ACG
[ENA]
¡û
>W141773304
JOIJ01000001
Actinomycetota
Prauserella rugosa [JOIJ]
96109
96036
-
Arg
ACG
[ENA]
¡û
>W141775186
JOJN01000002
Actinomycetota
Nocardioides aequoreus [JOJN]
741210
741283
+
Arg
ACG
[ENA]
¡û
>W141815842
JQJL01000009
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
408261
408188
-
Arg
ACG
[ENA]
¡û
>W1910141240
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
1098861
1098788
-
Arg
ACG
[ENA]
¡û
>W1910181553
BJMC01000021
Actinomycetota
Pimelobacter simplex NBRC 12069 [BJMC]
108651
108724
+
Arg
ACG
[ENA]
¡û
>W1810157309
PJBV01000033
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
55360
55433
+
Arg
ACG
[ENA]
¡û
>W1810189389
PKIZ01000029
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
13944
13871
-
Arg
ACG
[ENA]
¡û
>W1810427494
PYXZ01000001
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
871871
871944
+
Arg
ACG
[ENA]
¡û
>W1810462657
PZYY01000001
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
4513
4440
-
Arg
ACG
[ENA]
¡û
>W1810462728
PZYZ01000004
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
226354
226281
-
Arg
ACG
[ENA]
¡û
>W1810487175
QAYJ01000001
Actinomycetota
Nocardioides sp. CF204 [QAYJ]
2894077
2894004
-
Arg
ACG
[ENA]
¡û
>W1810503993
QBKO01000004
Actinomycetota
Nocardioides sp. CF167 [QBKO]
293275
293348
+
Arg
ACG
[ENA]
¡û
>W1810539907
QDGZ01000005
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
199302
199229
-
Arg
ACG
[ENA]
¡û
>W1810626163
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
459357
459430
+
Arg
ACG
[ENA]
¡û
>W1810626287
QHKZ01000005
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
186984
187057
+
Arg
ACG
[ENA]
¡û
>C151061341
CP009896
Actinomycetota
Pimelobacter simplex VKM Ac-2033D [CP009896]
5259827
5259754
-
Arg
ACG
[Ensembl]
¡û
>W1510060512
CCXJ01000243
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
2457
2384
-
Arg
ACG
[ENA]
¡û
>W1511402096
JTJI01000001
Actinomycetota
Prauserella sp. Am3 [JTJI]
139027
139100
+
Arg
ACG
[ENA]
¡û
>W11125273
ADVI01000011
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
15094
15021
-
Arg
ACG
[ENA]
¡û
>W1511540072
JZDQ01000249
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
4291
4364
+
Arg
ACG
[ENA]
¡û
>W1511687646
LFVR01000244
Actinomycetota
Streptomyces regensis NRRL B-11479 [LFVR]
8662
8589
-
Arg
ACG
[ENA]
¡û
>W11187349
CAEF01000054
Actinomycetota
Aeromicrobium massiliense JC14 [CAEF]
17038
17113
+
Arg
ACG
[ENA]
¡û
>W1610049468
BBEZ01000336
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
2038
2113
+
Arg
ACG
[ENA]
¡û
>W1610049598
BBFC01001526
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
365
438
+
Arg
ACG
[ENA]
¡û
>W1610050770
BBGE01001166
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
203
276
+
Arg
ACG
[ENA]
¡û
>W1610069678
BCSR01000026
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
35413
35340
-
Arg
ACG
[ENA]
¡û
>W1610723190
LMDE01000015
Actinomycetota
Nocardioides sp. Root122 [LMDE]
77463
77390
-
Arg
ACG
[ENA]
¡û
>W1610724071
LMDV01000009
Actinomycetota
Nocardioides sp. Root1257 [LMDV]
256172
256099
-
Arg
ACG
[ENA]
¡û
>W1610726049
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1631847
1631920
+
Arg
ACG
[ENA]
¡û
>W1610727249
LMGG01000001
Actinomycetota
Nocardioides sp. Root151 [LMGG]
1544050
1543977
-
Arg
ACG
[ENA]
¡û
>W1610730091
LMIN01000009
Actinomycetota
Nocardioides sp. Root224 [LMIN]
256171
256098
-
Arg
ACG
[ENA]
¡û
>W1610730174
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
691391
691316
-
Arg
ACG
[ENA]
¡û
>W1610730362
LMIT01000010
Actinomycetota
Nocardioides sp. Root240 [LMIT]
782878
782803
-
Arg
ACG
[ENA]
¡û
>W1610741121
LMRF01000005
Actinomycetota
Marmoricola sp. Leaf446 [LMRF]
199967
200040
+
Arg
ACG
[ENA]
¡û
>W1610743006
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
400829
400756
-
Arg
ACG
[ENA]
¡û
>W1610743059
LMSN01000016
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
327442
327369
-
Arg
ACG
[ENA]
¡û
>W1610743218
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
10659
10586
-
Arg
ACG
[ENA]
¡û
>W1610743403
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1740735
1740808
+
Arg
ACG
[ENA]
¡û
>W1610937829
LUPF01000062
Actinomycetota
Nocardioides sp. REDSEA-S22_B2 [LUPF]
8960
9033
+
Arg
ACG
[ENA]
¡û
>W1610937906
LUPH01000302
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
5690
5763
+
Arg
ACG
[ENA]
¡û
>W1610937941
LUPI01000064
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
10017
10090
+
Arg
ACG
[ENA]
¡û
>W1610937984
LUPJ01000229
Actinomycetota
Nocardioides sp. REDSEA-S31_B4 [LUPJ]
2311
2384
+
Arg
ACG
[ENA]
¡û
>W1610938034
LUPL01000007
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
35747
35674
-
Arg
ACG
[ENA]
¡û
>W1610938111
LUPM01000436
Actinomycetota
Nocardioides sp. REDSEA-S36_B10 [LUPM]
5672
5745
+
Arg
ACG
[ENA]
¡û
>W1610938123
LUPN01000118
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
7069
7142
+
Arg
ACG
[ENA]
¡û
>W1610938162
LUPO01000018
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
10102
10175
+
Arg
ACG
[ENA]
¡û
>W1610938220
LUPP01000078
Actinomycetota
Nocardioides sp. REDSEA-S40_B4 [LUPP]
12102
12029
-
Arg
ACG
[ENA]
¡û
>W1610938239
LUPQ01000037
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
12144
12071
-
Arg
ACG
[ENA]
¡û
>W1710045867
BBEZ01000336
Actinomycetota
Nocardioides sp. AN3 [BBEZ]
2038
2113
+
Arg
ACG
[ENA]
¡û
>W1710045997
BBFC01001526
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
365
438
+
Arg
ACG
[ENA]
¡û
>W1710047169
BBGE01001166
Actinomycetota
Nocardioides nitrophenolicus JCM 10703 [BBGE]
203
276
+
Arg
ACG
[ENA]
¡û
>W1710067051
BCSR01000026
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
35413
35340
-
Arg
ACG
[ENA]
¡û
>W1710083211
BDJE01000037
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
67758
67831
+
Arg
ACG
[ENA]
¡û
>W1710083315
BDJG01000014
Actinomycetota
Nocardioides sp. PD653 [BDJG]
5692
5619
-
Arg
ACG
[ENA]
¡û
>W1710512562
FMZM01000014
Actinomycetota
Nocardioides lianchengensis [FMZM]
139290
139217
-
Arg
ACG
[ENA]
¡û
>W1710520330
FNFN01000003
Actinomycetota
Nocardioides sp. YR527 [FNFN]
36022
36095
+
Arg
ACG
[ENA]
¡û
>W1710523597
FNIC01000010
Actinomycetota
Nocardioides szechwanensis [FNIC]
96500
96575
+
Arg
ACG
[ENA]
¡û
>W1710534301
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1724753
1724680
-
Arg
ACG
[ENA]
¡û
>W1710556312
FOKC01000017
Actinomycetota
Nocardioides alpinus [FOKC]
23636
23563
-
Arg
ACG
[ENA]
¡û
>W1710569389
FOUK01000001
Actinomycetota
Pimelobacter simplex [FOUK]
108754
108827
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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